Gene detail

Detail information of GWHGAAZE024318

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007032468.1	2.0732E-153	WRKY DNA-binding protein 72, putative [Theobroma cacao]
Swissprot	tr\|Q9LXG8\|WRK72_ARATH	2E-101	Probable WRKY transcription factor 72
trEMBL	tr\|A0A061EM50\|A0A061EM50_THECC	8E-154	WRKY DNA-binding protein 72, putative {ECO:0000313\|EMBL:EOY03394.1}
TAIR10	AT5G15130.1	2E-68	WRKY DNA-binding protein 72

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39981871	39987364	-
GWHAAZE00000007	mRNA	39981871	39987364	-
GWHAAZE00000007	exon	39981871	39982560	-
GWHAAZE00000007	exon	39984354	39984467	-
GWHAAZE00000007	exon	39985322	39985828	-
GWHAAZE00000007	exon	39987242	39987364	-
GWHAAZE00000007	CDS	39987242	39987364	-
GWHAAZE00000007	CDS	39985322	39985828	-
GWHAAZE00000007	CDS	39984354	39984467	-
GWHAAZE00000007	CDS	39981871	39982560	-

Transcript Sequence
>GWHTAAZE024352 ATGGAGGGTTACTGCAGGTTGAATGCAGAGAATAGGTATGGGGTTGTACTTAGAGATGATCAAAAGAGTAGTGATGAATCCATCGGCCATCAAGATCAAGGTTGCTGTGAAGATGCTTCAAAGGATAGTGAACTTGAATCATCCAAAGCTGAAATGAAAGAAGTAAGAGAAGAAAACACAAGACTAAAGTTGCTATTAGAGCAAATAGAGAAAGACTACAAATCTCTCCAAATGCGCCTTACAGAAATCTTTCAACAAAAATCCGAAAACAAGAGTAGCCCATCAACCACCAGCAACGAGGACCTCCATGCAGAAGCAGAACCGGAGCTCGTCTCTCTTCGACTCGGAATGAGCTCAAACGAGGCTAAAAAAGATGATATTACCACTACTAGCACCAGCAAAAGAAGAGATGGGGAGTTAAAAGATGGGCTTCAACTTGGACTCGACTGTAATTTTGGAGGGTTAGTTTCGGATTCGTCGGAGGTTCTTGTGGAACCGAGTCCCGAGAATAGCTCGGAGGAAATGAAGAGAGAGAAAGTGGTGAAGAGAGGTGGAGAAGATGAAGCTTCAGAAGGGTCAAGTGTGAAGAGAGCTAGGGTTTCTGTTAGAGCTAGATGTGATACCCCAACTATGCATGATGGGTGCCATTGGAGGAAATATGGACAAAAAATTGCCAAAGGAAATCCATGCCCTAGGGCATACTATCGTTGTACGGTTGCACCAGCTTGCCCAGTTAGAAAACAGGTTCAAAGATGCGCGGATGACATGTCTATCCTGATCACAACCTATGAAGGAACCCACAACCACTCGCTCCCGATCTCAGCCACAGCCATGGCTTCAACCACCTCAGCTGCGGCTTCCATGCTTCTCTCTAGCTCATCTCAACCGGGCCTCAGCTCATCAGCCACCACCACCCAAGCTGCTAACCTTCACGGCTTAAACCCCAATCTCTCCACCAATCCAAGCACAAGACCATTCTACTTGCCAAACACTCCCTCTCACTCATTCCCAACAATCACTTTAGACCTCACCACAAGTTCTTCCACTCCGTTCAATATGTTCCTTTCTAGTTACCAAACAAACCCAACATTTCCTTCAAAAAGCTTAAACTTTTCTTCCTCAGAATCCAACATGCTGCTACCTACGGTTTGGGGCAATGGGTATCTTAACCATGGGACACTACCCTACAATAAGAGTCACATTGGCTCCTTAAACCTTGAAAAGGCATCACATTCACAAGAACATCTTTATCAACCCTATATGGAAAAGAGCAACCAAACTTCCCAACAGCCACTAACAGAGACCTTAACTAAGGCAATCACTGCAGACCCCAGTTTCCGATCGGTGATAGCGGCTGCTATTTCGTCGGTAATTGGCAGTGGGACACAAGGGAACCAAGGTGGAGGGGAGAGCTTTGGTCACCACTTGAAGTAG

Network for GWHGAAZE024318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	213	269	2.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.052
	SRR3591706	second leaf	0.787
	SRR3591707	mature leaf	0.325
	SRR3591708	Shoot apex	0.829
	SRR3591709	Stem	0.115
	SRR3591710	White floral bud	0.516
	SRR3591711	White flower	0.075
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.140
SRP173429	SRR8316895	Juvenile bud stage	0.294
	SRR8316896	Juvenile bud stage	0.170
	SRR8316897	Juvenile bud stage	0.090
	SRR8316894	Third green stage	0.012
	SRR8316900	Third green stage	0.349
	SRR8316901	Third green stage	0.205
	SRR8316898	Complete white stage	0.060
	SRR8316899	Complete white stage	0.411
	SRR8316903	Complete white stage	0.372
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.073
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.835
SRP132670	SRR6706286	Control	0.086
	SRR6706287	Light intensity 50%	0.118
	SRR6706288	Light intensity 20%	0.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.217
	CNS0095593	Slightly white alabastrum(diploid) 2	1.015
	CNS0095594	Slightly white alabastrum(diploid) 3	1.023
	CNS0095595	Whole white alabastrum(diploid) 2	0.764
	CNS0095596	Whole white alabastrum(diploid) 3	0.803
	CNS0095597	Whole white alabastrum(diploid) 4	0.527
	CNS0095598	Silvery flower (diploied) 1	0.479
	CNS0095599	Silvery flower (diploied) 2	0.077
	CNS0095600	Silvery flower (diploied) 3	0.830
	CNS0095601	Golden flower (diploid) 1	0.194
	CNS0095602	Golden flower (diploid) 2	0.293
	CNS0095603	Golden flower (diploid) 3	0.188
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.169
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.232
	CNS0095612	Silvery flower (tetraploid) 3	0.126
	CNS0095613	Golden flower (tetraploid) 1	0.061
	CNS0095614	Golden flower (tetraploid) 2	0.409
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	1.327
	CRR073298	Stem 2	1.229
	CRR073299	Stem 3	0.144
	CRR073300	Leaf 1	0.955
	CRR073301	Leaf 2	1.628
	CRR073302	Leaf 3	0.379
	CRR073303	Juvenile bud 1	0.686
	CRR073304	Juvenile bud 2	0.052
	CRR073305	Juvenile bud 3	0.845
	CRR073306	Third green 1	0.179
	CRR073307	Third green 2	0.365
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.189
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.042
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.111
	CRR073320	Tawny withering 3	0.288