Gene detail

Detail information of GWHGAAZE024306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI22184.3	2.5688E-145	unnamed protein product [Vitis vinifera]
COG	YP_003267608.1	6E-18	serine/threonine protein kinase
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	2E-140	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|W1P784\|W1P784_AMBTC	2E-145	Uncharacterized protein {ECO:0000313\|EMBL:ERN03778.1}
TAIR10	AT5G15080.1	2E-114	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39774765	39782336	+
GWHAAZE00000007	mRNA	39774765	39782336	+
GWHAAZE00000007	exon	39774765	39774771	+
GWHAAZE00000007	exon	39774846	39774981	+
GWHAAZE00000007	exon	39777955	39778153	+
GWHAAZE00000007	exon	39778262	39778397	+
GWHAAZE00000007	exon	39779566	39779704	+
GWHAAZE00000007	exon	39779783	39779904	+
GWHAAZE00000007	exon	39782146	39782336	+
GWHAAZE00000007	CDS	39774765	39774771	+
GWHAAZE00000007	CDS	39774846	39774981	+
GWHAAZE00000007	CDS	39777955	39778153	+
GWHAAZE00000007	CDS	39778262	39778397	+
GWHAAZE00000007	CDS	39779566	39779704	+
GWHAAZE00000007	CDS	39779783	39779904	+
GWHAAZE00000007	CDS	39782146	39782336	+

Transcript Sequence
>GWHTAAZE024340 ATGGGAGGGTTTTGGGGGAAAATGGGTATAGGCCCTGATGCTGTAAAAATGGGGACTTTGGTTGTGAGCAAATCAAAGGAAATTAAGGAGGAGGAAGAAGATGATGCTGAGGGGACTACTAGTGGGTGTTGGATTAGGTTCAGCTTCAAAATTCTCTTCGGTGAGCTCAAGGCAGCAACAAGGAATTTTAGACCTGAGAGTCTCCTTGGTGAGGGTGGCCGCTGTGTCTTCAAAGGCTGGATCAACGAAAATGGAATCACACCAGTAAAACCAGGCACGGGTCTTACGGTTGCTGTTAAAACCCTCAATCATGATGGACTTCAGGGTCACAAAGAATGGCTTGCTGAAGTAAATTTTCTCGGCGACTTACTCCATCCTAACTTGGTTAAATTGATTGGGTGTTGCATCGAGGATGACCAAAGGCTGCTTGTGTACGAGTTCATGCCTCGGGGAAGCCTGGAGAATCACTTGTTTAGAAGGTCTCTTCCTCTTCCTTGGTCTATCAGAATGAAAATTGCCCTTGGTGCTGCAAAAGGACTTGCTTTTCTTCATGAGGAAGCTGAAAGACCAGTTATATACAGAGATTTTAAGACGCCTAATATTCTATTGGACGGTATGACTACAATGCAAAGCTTTCTGATTTTGGACTTGCCAAAGACGGACCTGATGGAGATAAGACGATGTATCTACTCGGTAATGGGAACATATGGCTATGCAGCCCCTGAATATGTGATGACGGGACATCTAACGTCAAAGAGCGATGTCTACAGCTTTGGAGTTGTTTTACTTGAAATGTTGACTGGCCGAAGATCAATGGACAAAAATCGACCAAATGGGGAGCATAACCTCGTAGAATGGGCACGCACATCTAGAGAGAGGCGGAGATTCTACCGCTTGATAGATCCACGCCGAGGGCCGATTCTCAATTAA

Network for GWHGAAZE024306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	92	280	6.60E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.581
	SRR3591706	second leaf	2.025
	SRR3591707	mature leaf	2.156
	SRR3591708	Shoot apex	6.918
	SRR3591709	Stem	1.751
	SRR3591710	White floral bud	4.473
	SRR3591711	White flower	3.061
	SRR3591712	Green floral bud	4.075
	SRR3591713	Yellow flower	1.313
SRP173429	SRR8316895	Juvenile bud stage	1.883
	SRR8316896	Juvenile bud stage	0.775
	SRR8316897	Juvenile bud stage	0.949
	SRR8316894	Third green stage	0.521
	SRR8316900	Third green stage	0.896
	SRR8316901	Third green stage	1.908
	SRR8316898	Complete white stage	0.593
	SRR8316899	Complete white stage	1.807
	SRR8316903	Complete white stage	0.198
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.473
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.329
	SRR8316907	Gold flowering stage	0.646
	SRR8316908	Gold flowering stage	0.878
SRP132670	SRR6706286	Control	1.082
	SRR6706287	Light intensity 50%	1.286
	SRR6706288	Light intensity 20%	1.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.191
	CNS0095593	Slightly white alabastrum(diploid) 2	1.017
	CNS0095594	Slightly white alabastrum(diploid) 3	1.022
	CNS0095595	Whole white alabastrum(diploid) 2	0.592
	CNS0095596	Whole white alabastrum(diploid) 3	1.327
	CNS0095597	Whole white alabastrum(diploid) 4	0.661
	CNS0095598	Silvery flower (diploied) 1	1.124
	CNS0095599	Silvery flower (diploied) 2	0.608
	CNS0095600	Silvery flower (diploied) 3	1.078
	CNS0095601	Golden flower (diploid) 1	0.942
	CNS0095602	Golden flower (diploid) 2	1.173
	CNS0095603	Golden flower (diploid) 3	0.634
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.360
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.912
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.834
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.703
	CNS0095610	Silvery flower (tetraploid) 1	2.614
	CNS0095611	Silvery flower (tetraploid) 2	1.499
	CNS0095612	Silvery flower (tetraploid) 3	1.038
	CNS0095613	Golden flower (tetraploid) 1	1.562
	CNS0095614	Golden flower (tetraploid) 2	2.444
	CNS0095615	Golden flower (tetraploid) 3	0.783
CRA001975	CRR073297	Stem 1	1.363
	CRR073298	Stem 2	1.330
	CRR073299	Stem 3	2.263
	CRR073300	Leaf 1	3.701
	CRR073301	Leaf 2	3.612
	CRR073302	Leaf 3	1.884
	CRR073303	Juvenile bud 1	2.950
	CRR073304	Juvenile bud 2	0.930
	CRR073305	Juvenile bud 3	4.904
	CRR073306	Third green 1	0.700
	CRR073307	Third green 2	0.306
	CRR073308	Third green 3	0.347
	CRR073309	Second white 1	0.445
	CRR073310	Second white 2	0.345
	CRR073311	Second white 3	0.029
	CRR073312	Silver flowering 1	0.073
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.176
	CRR073315	Gold flowering 1	3.863
	CRR073316	Gold flowering 2	1.365
	CRR073317	Gold flowering 3	1.873
	CRR073318	Tawny withering 1	3.563
	CRR073319	Tawny withering 2	3.062
	CRR073320	Tawny withering 3	1.105