Gene detail

Detail information of GWHGAAZE024302

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002517493.1	0	multidrug resistance protein 1, 2, putative [Ricinus communis]
COG	YP_003134859.1	2E-113	ABC-type multidrug transport system, ATPase and permease component
Swissprot	tr\|Q9LJX0\|AB19B_ARATH	0	ABC transporter B family member 19
trEMBL	tr\|M0ZLZ3\|M0ZLZ3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003590}
TAIR10	AT3G28860.1	0	ATP binding cassette subfamily B19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39653003	39661097	+
GWHAAZE00000007	mRNA	39653003	39661097	+
GWHAAZE00000007	exon	39653003	39653254	+
GWHAAZE00000007	exon	39653603	39653657	+
GWHAAZE00000007	exon	39654452	39654627	+
GWHAAZE00000007	exon	39655229	39655429	+
GWHAAZE00000007	exon	39655554	39655813	+
GWHAAZE00000007	exon	39655900	39655962	+
GWHAAZE00000007	exon	39656072	39656217	+
GWHAAZE00000007	exon	39656492	39656715	+
GWHAAZE00000007	exon	39657287	39658109	+
GWHAAZE00000007	exon	39658230	39658471	+
GWHAAZE00000007	exon	39659889	39661097	+
GWHAAZE00000007	CDS	39653003	39653254	+
GWHAAZE00000007	CDS	39653603	39653657	+
GWHAAZE00000007	CDS	39654452	39654627	+
GWHAAZE00000007	CDS	39655229	39655429	+
GWHAAZE00000007	CDS	39655554	39655813	+
GWHAAZE00000007	CDS	39655900	39655962	+
GWHAAZE00000007	CDS	39656072	39656217	+
GWHAAZE00000007	CDS	39656492	39656715	+
GWHAAZE00000007	CDS	39657287	39658109	+
GWHAAZE00000007	CDS	39658230	39658471	+
GWHAAZE00000007	CDS	39659889	39661097	+

Transcript Sequence
>GWHTAAZE024336 ATGGCGGATACAACAGTAGAGGCAAAAGCAATGCCGGCCAAGCCGGAGAAGAAAAATGAACAAAGCCTCCCTTTCTACCAGCTCTTCTCCTTCGCCGACAAGTATGATTACCTCCTCATGATCTCCGGCAGCTTGGGTGCTATTATTCATGGCTCCTCCATGCCTTTCTTCTTCCTTCTCTTCGGTCAAATGGTTAATGGCTTCGGTAAAAACCAATCCGATTTGCACAAACTCACTGCTGAAGTTTCAAAGTATGCTCTGTATTTCGTGTACCTTGGATTGGTTGTGTGTGTATCCTCATATGCAGAGATAGGGTGTTGGATGTATACTGGGGAGAGGCAAGTGAGTGCATTGAGGAAGAACTATTTAGAGGCAGTGTTGAAACAGGACGTTGGGTTCTTTGATACAGATGCTAGAACGGGTGATATTGTTTTTAGTGTCTCCACGGACACACTCCTTGTTCAAGATGCCATCAGTGAGAAGGTGGGGAACTTCATTCATTATCTTTCAACATTTCTGGCTGGATTGGTGGTTGGTTTTGTGTCAGCATGGAAGCTAGCCCTTCTCAGTGTTGCAGTGATCCCAGGAATTGCTTTTGCTGGGGGTTTATATGCCTATACTCTCACTGGTCTAACCTCAAAGAGCCGCGAATCTTATGCCAATGCAGGCATAATTGCCGAACAGGCCATTGCACAAGTTAGGACAGTTTACTCTTATGTTGGTGAGAGCAAGTCTCTAAATGCATATTCAGATGCAATACAACACACGCTCAAGCTCGGGTACAAGGCCGGAATGGCCAAAGGCCTTGGACTGGGATGTACTTACGGAATAGCATGCATGTCGTGGGCACTTGTTTTCTGGTATGCCGGTGTGTTTATAAGGAATGGACAAACCGATGGAGGAAAGGCATTCACCGCTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGCCAATCATTTTCGAATCTTGGAGCATTCAGCAAAGGTAAAGCAGCTGGGTATAACTATCCATCACGGCCTGATGTTATTATCTTTAGAGATTTCAACATATTCTTCCCTGCGGGAAAGACTGTTGCAGTTGTTGGAGGTAGTGGATCAGGGAAAAGCACTGTGGTTTCACTTATAGAAAGATTCTATGATCCTAGTCAAGGGCAAATTTTGCTGGACGATGTGGACATAAAGACTCTGCAACTAAGATGGTTGCGAGATCAGATAGGTCTTGTGAACCAAGAACCAGCACTCTTTGCTACTACCATACTTGAGAACATCCTCTATGGAAAGCCTGATGCAACTAGGGCCGATGTGGAAGCTTCTGCCTCAGCTGCTAATGCTCATAGCTTTATCGCCTTGCTCCCTCGTGGGTATAACACCCAGGTGGGAGAGCGAGGAGTTCAACTCTCAGGGGGACAGAAACAGAGAATCGCAATTGCAAGAGCTATGTTGAAAAACCCAAAGATCCTCCTCCTAGATGAAGCAACTAGTGCACTAGATGCGGGTTCAGAGAGCATTGTTCAAGAAGCTCTAGACCGGCTAATGGTTGGAAGAACAACAGTAGTAGTCGCTCATCGTCTCTCCACCATAAGAAACGTCGATTCAATTGCCGTTATACAACAGGGCCAAGTTGTTGAAACCGGAACTCACGAAGAACTAATTGCCAAACCTGGGGCCTATGCTTCCTTAATCCGATTCCAGGAAATGATAGGAAACAGAGACTTTTCAAATCCTTCAACAACCCATCGTTCACGTTCATCGAGACTAAGCCACTCATTGTCAACAAAGTCTCTAAGCCTTCGATCTGGCAGCTTAAGAAATTTGAGTTATCAGTACAGCACTGGTGCCGATGGGCGTATAGAAATGGTGTCCAATGCTGAAACAGAGAGAAAAAATCCAGCACCACGCGGGTACTTTTGCCGGCTTCTAAAGCTAAATGCTCCTGAGTGGCCTTATTCAATCATGGGAGCTGTTGGGTCTGTTCTTTCAGGCTTTATAGGTCCAACTTTTGCCATTGTTATGAGTAATATGATCGAGGTGTTCTATTACCAAAATCCTGCAAGCATGGAAAGGAAGACGAAGGAATATGTTTTTATATACATTGGAGCCGGTCTATACGCTGTAGTCGCATATTTGATCCAGCATTACTTTTTCAGTATTATGGGAGAGAACCTCACTACAAGGGTGAGAAGGATGATGCTTGCAGCAATACTAAGGAATGAGGTTGGATGGTTTGACGAAGACGAGCACAACTCGAGCCTAGTTGCAGCTCGGCTAGCCACGGACGCTGCCGATGTGAAATCGGCCATTGCCGAGAGGATCTCAGTGATATTGCAGAACATGACTTCTCTGCTCACTTCATTCATTGTTGCATTCATTATTGAATGGAGGGTCTCACTTCTCATCTTAGCCACTTTCCCTCTTCTTGTCTTAGCCAATTTTGCTCAGCAACTTTCCCTCAAAGGATTTGCCGGTGACACGGCCAAAGCACATGCCAAAACCAGCATGATCGCCGGTGAAGGTGTAAGCAACATCCGTACTGTTGCAGCCTTCAATGCCCAAGACAAAATCCTCTCGTTATTTTGCCTTGAACTCCGCACCCCCCAAAAGGGCAGTTTCCGCCGCAGCCAAATATCCGGCCTCCTCTTCGGCCTCTCCCAACTGGCACTCTACGGGTCCGAGGCTCTAATCCTCTGGTACGGTGCCCACCTCGTTAACAAAGGCCTCTCTACATTCTCTAAAGTCATCAAAGTCTTTGTGGTTCTAGTCATCACCGCCAACTCCGTAGCTGAAACCGTGAGCCTGGCTCCAGAAATTATTAGGGGCGGTGAAGCCATCGGCTCAGTCTTTTCAGTTCTCGATAGGTCAACGAGAATAGACTCCGATGATCCAGATGCTGAGGTGGTCGAGTCCATTCGTGGGGATATTGAATTACGCCATGTTGACTTTGCATATCCTTCGAGGCCCGATATCATTGTGTTTAAGGACCTTAACCTTAGGATCCGAGCCGGACAAAGCCAAGCTCTTGTTGGGGCTAGTGGATCCGGAAAGAGTTCGGTTGTGGCCTTGATCGAGCGGTTCTACGATCCGACAGCGGGGAAGGTCATGATCGATGGGAAAGACATTAGGCGGTTGAACTTGAAGTCTCTAAGGCTCAAAATTGGGTTGGTTCAACAAGAGCCAGCACTATTTGCCGCTAGCATTTTCGACAACATTGCCTATGGGAAAGAAGGTGCAACCGAGGCTGAGGTGGTCGAGGCCGCTCGTGCAGCAAATGTGCACACATTTGTTAGTGGTTTGCCTCAAGGGTACAAAACCCCGGTTGGGGAGCGAGGTGTACAACTCTCGGGCGGACAAAAACAAAGGATCGCAATTGCTCGGGCAGTTCTTAAGGACCCCACAATACTTTTACTAGATGAGGCCACAAGTGCGCTTGATGCTGAGTCAGAGTGTATGCTACAAGAAGCACTCGAGAGACTAATGAGGGGCCGAACCACTGTGCTCGTGGCTCATCGTTTATCGACTATACGAAGGGTTGACTTTATCGGGGTTGTGCAAGATGGGCGGATCGTAGAGCACGGGAGCCATGCTGAGCTGGTCGGCTGGCCCGAAGGGGCTTATTCTAGATTGTTGCAGCTCCAGCACCATCACATATGA

Network for GWHGAAZE024302

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	45	314	4.70E-56
PF00005.28	ABC_tran	348	495	7.00E-33
PF00664.24	ABC_membrane	652	923	2.00E-51
PF00005.28	ABC_tran	993	1141	2.10E-32

Protein Sequence

>GWHPAAZE024320
MADTTVEAKAMPAKPEKKNEQSLPFYQLFSFADKYDYLLMISGSLGAIIHGSSMPFFFLLFGQMVNGFGKNQSDLHKLTAEVSKYALYFVYLGLVVCVSSYAEIGCWMYTGERQVSALRKNYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKSLNAYSDAIQHTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYNYPSRPDVIIFRDFNIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPSQGQILLDDVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATRADVEASASAANAHSFIALLPRGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKPGAYASLIRFQEMIGNRDFSNPSTTHRSRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMVSNAETERKNPAPRGYFCRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYQNPASMERKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEDEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIIEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCLELRTPQKGSFRRSQISGLLFGLSQLALYGSEALILWYGAHLVNKGLSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAIGSVFSVLDRSTRIDSDDPDAEVVESIRGDIELRHVDFAYPSRPDIIVFKDLNLRIRAGQSQALVGASGSGKSSVVALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHTFVSGLPQGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECMLQEALERLMRGRTTVLVAHRLSTIRRVDFIGVVQDGRIVEHGSHAELVGWPEGAYSRLLQLQHHHI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.098
	SRR3591706	second leaf	3.782
	SRR3591707	mature leaf	0.819
	SRR3591708	Shoot apex	11.749
	SRR3591709	Stem	1.745
	SRR3591710	White floral bud	25.939
	SRR3591711	White flower	5.706
	SRR3591712	Green floral bud	21.774
	SRR3591713	Yellow flower	0.324
SRP173429	SRR8316895	Juvenile bud stage	12.684
	SRR8316896	Juvenile bud stage	16.195
	SRR8316897	Juvenile bud stage	4.297
	SRR8316894	Third green stage	19.469
	SRR8316900	Third green stage	40.101
	SRR8316901	Third green stage	37.411
	SRR8316898	Complete white stage	5.531
	SRR8316899	Complete white stage	33.740
	SRR8316903	Complete white stage	13.899
	SRR8316902	Silver flowering stage	1.935
	SRR8316904	Silver flowering stage	2.908
	SRR8316905	Silver flowering stage	1.453
	SRR8316906	Gold flowering stage	0.664
	SRR8316907	Gold flowering stage	0.714
	SRR8316908	Gold flowering stage	0.169
SRP132670	SRR6706286	Control	29.457
	SRR6706287	Light intensity 50%	37.908
	SRR6706288	Light intensity 20%	36.179
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.928
	CNS0095593	Slightly white alabastrum(diploid) 2	24.852
	CNS0095594	Slightly white alabastrum(diploid) 3	9.903
	CNS0095595	Whole white alabastrum(diploid) 2	13.234
	CNS0095596	Whole white alabastrum(diploid) 3	5.308
	CNS0095597	Whole white alabastrum(diploid) 4	8.583
	CNS0095598	Silvery flower (diploied) 1	13.168
	CNS0095599	Silvery flower (diploied) 2	15.576
	CNS0095600	Silvery flower (diploied) 3	3.842
	CNS0095601	Golden flower (diploid) 1	9.699
	CNS0095602	Golden flower (diploid) 2	3.949
	CNS0095603	Golden flower (diploid) 3	4.245
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.858
	CNS0095606	Slightly white alabastrum(tetraploid) 3	99.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.449
	CNS0095610	Silvery flower (tetraploid) 1	2.254
	CNS0095611	Silvery flower (tetraploid) 2	4.817
	CNS0095612	Silvery flower (tetraploid) 3	2.154
	CNS0095613	Golden flower (tetraploid) 1	0.071
	CNS0095614	Golden flower (tetraploid) 2	0.298
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	31.499
	CRR073298	Stem 2	39.484
	CRR073299	Stem 3	26.693
	CRR073300	Leaf 1	91.820
	CRR073301	Leaf 2	87.422
	CRR073302	Leaf 3	52.486
	CRR073303	Juvenile bud 1	60.329
	CRR073304	Juvenile bud 2	41.968
	CRR073305	Juvenile bud 3	161.633
	CRR073306	Third green 1	27.297
	CRR073307	Third green 2	21.046
	CRR073308	Third green 3	28.685
	CRR073309	Second white 1	0.744
	CRR073310	Second white 2	0.078
	CRR073311	Second white 3	0.185
	CRR073312	Silver flowering 1	0.104
	CRR073313	Silver flowering 2	0.085
	CRR073314	Silver flowering 3	0.022
	CRR073315	Gold flowering 1	1.584
	CRR073316	Gold flowering 2	2.466
	CRR073317	Gold flowering 3	1.260
	CRR073318	Tawny withering 1	1.467
	CRR073319	Tawny withering 2	2.060
	CRR073320	Tawny withering 3	0.998