Detail information of GWHGAAZE024301


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACN40181.10unknown [Picea sitchensis]
Swissprottr|P33629|TBA_PRUDU0Tubulin alpha chain
trEMBLtr|F6H5R4|F6H5R4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47535.1}
TAIR10AT1G50010.10tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3963336739636564-
GWHAAZE00000007mRNA3963336739636564-
GWHAAZE00000007exon3963647239636564-
GWHAAZE00000007exon3963593539636169-
GWHAAZE00000007exon3963419839634568-
GWHAAZE00000007exon3963336739634071-
GWHAAZE00000007CDS3963647239636564-
GWHAAZE00000007CDS3963593539636169-
GWHAAZE00000007CDS3963419839634568-
GWHAAZE00000007CDS3963341839634071-
GWHAAZE00000007three_prime_UTR3963336739633417-
Transcript Sequence

Network for GWHGAAZE024301

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin32131.60E-68
PF03953.18Tubulin_C2633922.30E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity
GO:0005200molecular_functionstructural constituent of cytoskeleton

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf94.287
SRR3591706second leaf26.001
SRR3591707mature leaf2.297
SRR3591708Shoot apex248.179
SRR3591709Stem42.555
SRR3591710White floral bud4.671
SRR3591711White flower2.127
SRR3591712Green floral bud9.508
SRR3591713Yellow flower0.256
SRP173429 SRR8316895Juvenile bud stage 33.573
SRR8316896Juvenile bud stage 31.414
SRR8316897Juvenile bud stage 18.478
SRR8316894Third green stage 9.669
SRR8316900Third green stage 10.052
SRR8316901Third green stage 7.368
SRR8316898Complete white stage 6.141
SRR8316899Complete white stage 4.309
SRR8316903Complete white stage 14.707
SRR8316902Silver flowering stage18.863
SRR8316904Silver flowering stage19.958
SRR8316905Silver flowering stage13.283
SRR8316906Gold flowering stage 8.021
SRR8316907Gold flowering stage 6.975
SRR8316908Gold flowering stage 1.375
SRP132670SRR6706286Control7.752
SRR6706287Light intensity 50%7.456
SRR6706288Light intensity 20%10.774
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.069
CNS0095593Slightly white alabastrum(diploid) 227.554
CNS0095594Slightly white alabastrum(diploid) 321.360
CNS0095595Whole white alabastrum(diploid) 26.057
CNS0095596Whole white alabastrum(diploid) 32.956
CNS0095597Whole white alabastrum(diploid) 43.958
CNS0095598Silvery flower (diploied) 113.745
CNS0095599Silvery flower (diploied) 215.292
CNS0095600Silvery flower (diploied) 38.303
CNS0095601Golden flower (diploid) 14.834
CNS0095602Golden flower (diploid) 25.097
CNS0095603Golden flower (diploid) 34.611
CNS0095604Slightly white alabastrum(tetraploid) 137.129
CNS0095605Slightly white alabastrum(tetraploid) 226.896
CNS0095606Slightly white alabastrum(tetraploid) 360.120
CNS0095607Whole white alabastrum(tetraploid) 116.278
CNS0095608Whole white alabastrum(tetraploid) 23.003
CNS0095609Whole white alabastrum(tetraploid) 34.717
CNS0095610Silvery flower (tetraploid) 10.699
CNS0095611Silvery flower (tetraploid) 23.817
CNS0095612Silvery flower (tetraploid) 31.778
CNS0095613Golden flower (tetraploid) 10.298
CNS0095614Golden flower (tetraploid) 20.333
CNS0095615Golden flower (tetraploid) 30.138
CRA001975CRR073297Stem 164.525
CRR073298Stem 265.692
CRR073299Stem 3122.192
CRR073300Leaf 110.362
CRR073301Leaf 210.333
CRR073302Leaf 312.613
CRR073303Juvenile bud 15.324
CRR073304Juvenile bud 22.093
CRR073305Juvenile bud 36.381
CRR073306Third green 145.804
CRR073307Third green 266.216
CRR073308Third green 357.530
CRR073309Second white 13.430
CRR073310Second white 21.503
CRR073311Second white 30.497
CRR073312Silver flowering 10.179
CRR073313Silver flowering 20.204
CRR073314Silver flowering 30.205
CRR073315Gold flowering 13.191
CRR073316Gold flowering 24.629
CRR073317Gold flowering 37.565
CRR073318Tawny withering 1139.015
CRR073319Tawny withering 299.821
CRR073320Tawny withering 3140.419