Gene detail

Detail information of GWHGAAZE024298

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009785295.1	PREDICTED: cullin-3A-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9ZVH4\|CUL3A_ARATH	Cullin-3A
trEMBL	tr\|M0ZLG9\|M0ZLG9_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003338}
TAIR10	AT1G26830.1	cullin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39604230	39611902	-
GWHAAZE00000007	mRNA	39604230	39611902	-
GWHAAZE00000007	exon	39611742	39611902	-
GWHAAZE00000007	exon	39604230	39606270	-
GWHAAZE00000007	CDS	39611742	39611902	-
GWHAAZE00000007	CDS	39604230	39606270	-

Transcript Sequence
>GWHTAAZE024332 ATGAGTGCTCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAACATCGGGTTGTTGTGGATCCGAAGTACGCAGAGAAGACATGGAAGATTCTGGAGCATGCGATTCACGAGATATATAATCATAATGCTAGTGGTCTTAGCTTTGAAGAGCTTTACAGGAACGCTTACAATATGGTTCTGCACAAATTTGGAGAGAAACTCTACTCTGGGCTCGTTTCAACGATGACATCACATCTAAAAGATATAGCAAAATCTATTGAGGCTGCACAGGGACCTCTCTTTCTTGAAGAGCTTAACCGAAAATGGACTGACCACAACAAAGCCTTGCAAATGATCCGAGATATATTAATGTACATGGACCGTACTTTTATCCCAAGCACCCACAAGACCCCGGTTCACGAGCTCGGCTTGAATTTATGGAGGGACAATATCGTCCGCTCCGATAAAATCCAGAGCAGGCTTCAAGATATACTACTTGAACTTGTGCAAAAAGAACGGACCGGTGAAGTTATAAACAGGGGTTTAATGAGGAATATAATTAAAATGTTGATGGATTTAGGCTCATCTGTCTACCAAGAAGACTTTGAGAAGCCGTTTCTTGATGTTTCAGCTGATTTTTATCGGGGCGAGTCTCAACAGTTCATCGAATGCTGTGATTGTGGGGATTATTTGAAGAAGGCCGAGAAACGGTTGAACGAAGAGATCGATCGAGTCTCCCATTATTTGGATTTGAAAAGTGAGGCTAAAATAACTAACGTGGTGGATACCGAGATGATTGAAAGCCATATGAACCGGTTAGTCCATATGGAAAACTCGGGCTTGGTTAACATGCTTGTGGATGATAAATACGAGGATTTGGGAAGAATGTTCGGTTTGTTCCGTAGGGTACCTAATGGACTATTATTAATCCGAGATGTGATGACTTCTCATCTTCGGGAAACGGGCAAGCAACTAGTCACTGACCCGGAAAGGTTGAAGGACCCGGTTGACTTTGTGCAAAGGCTCTTGGATGAAAAGGACAAGCATGACAAGATCATTAACTTGGCATTTAATAATGATAAGACATTCCAAAACGCGCTAAATTCCTCGTTCGAGTATTTCATTAATTTGAATCCTCGATCACCAGAATTCATTTCCTTGTTTGTTGATGATAAGCTAAGAAGAGGGCTCAAAGGGGTTAGTGAAGAGGATGTAGAGATTGTGCTTGATAAAGTCATGATGCTTTTCCGCTACCTTCAAGAGAAAGATGTTTTCGAGAAATATTACAAGCAACACTTGGCGAAAAGGCTTCTTTCAGGGAAGACCGTATCTGATGATGCGGAGAGAAGTTTAATAGTTAAGCTCAAAACCGAATGCGGGTACCAGTTCACTTCAAAATTGGAAGGTATGTTCACTGATATGAAGACTTCTCAAGATACAATGAAAGCGTTTTATGCAGCTGTGGGTGCCGAATTAGCAGAGGGTCCCACCCTAGCAGTCCAGGTCCTAACCACTGGTTCGTGGCCCACTCAGTCGGGCACCACCTGCAACCTCCCGCCTGAAATACTCGGAGTTTGCAACAAATTCCGAACCTTTTACCTCGGGACCCACACGGGCCGGAGATTATCGTGGCAAACAAACATGGGCACGGCTGATTTGAAGGCAACGTTCGGAAAAGGCCAAAAACATGAGCTTAACGTTTCTACGTACCAAATGTGTATCCTTATGCTCTTCAATAATGCGGATCAACTCACTTATAGAGAAATCGAACAGGCAACGGAGATACCAGCGCCGGATTTGAAGCGATGCCTACAATCTCTTGCTTGTGTTAAGGGGAAAAATGTTCTTCGAAAGGACCCGATGAGCAAAGAAATAGGCGAGGACGATACGTTCTTGTTTAACGACAAATTTTCGAGCAAGTTTTATAAGGTGAAGATAGGGACCGTGGTGGCACAAAAGGAGTCGGAGCCAGAGAAACAAGAGACAAGGCAGAGAGTGGAGGAGGACCGGAAGCCGCAAATCGAGGCGGCGATAGTGAGGATAATGAAGGCAAGGCGAGTTCTTGATCATAACAACATTGTTACCGAGGTTACTAAGCAGTTGCAGTCGAGGTTCTTGCCGAATCCAGTGGTGATAAAGAAGCGAATCGAGTCTTTGATTGAAAGGGAGTTTTTGGAGAGGGATAAAGTGGACCGGAAGTTGTACCGGTACTTGGCTTGA

Network for GWHGAAZE024298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	29	631	3.10E-224
PF10557.10	Cullin_Nedd8	663	723	3.20E-25

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03869	CUL3	Ubiquitin mediated proteolysis	map04120
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.046
	SRR3591706	second leaf	14.883
	SRR3591707	mature leaf	18.213
	SRR3591708	Shoot apex	22.611
	SRR3591709	Stem	30.558
	SRR3591710	White floral bud	43.104
	SRR3591711	White flower	56.708
	SRR3591712	Green floral bud	42.185
	SRR3591713	Yellow flower	55.834
SRP173429	SRR8316895	Juvenile bud stage	30.068
	SRR8316896	Juvenile bud stage	47.094
	SRR8316897	Juvenile bud stage	25.778
	SRR8316894	Third green stage	14.405
	SRR8316900	Third green stage	40.215
	SRR8316901	Third green stage	45.833
	SRR8316898	Complete white stage	15.174
	SRR8316899	Complete white stage	57.806
	SRR8316903	Complete white stage	35.026
	SRR8316902	Silver flowering stage	27.122
	SRR8316904	Silver flowering stage	41.174
	SRR8316905	Silver flowering stage	22.311
	SRR8316906	Gold flowering stage	74.859
	SRR8316907	Gold flowering stage	75.288
	SRR8316908	Gold flowering stage	80.078
SRP132670	SRR6706286	Control	47.383
	SRR6706287	Light intensity 50%	43.934
	SRR6706288	Light intensity 20%	45.070
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.666
	CNS0095593	Slightly white alabastrum(diploid) 2	35.517
	CNS0095594	Slightly white alabastrum(diploid) 3	38.060
	CNS0095595	Whole white alabastrum(diploid) 2	32.274
	CNS0095596	Whole white alabastrum(diploid) 3	24.285
	CNS0095597	Whole white alabastrum(diploid) 4	29.199
	CNS0095598	Silvery flower (diploied) 1	35.666
	CNS0095599	Silvery flower (diploied) 2	43.063
	CNS0095600	Silvery flower (diploied) 3	60.689
	CNS0095601	Golden flower (diploid) 1	35.318
	CNS0095602	Golden flower (diploid) 2	69.766
	CNS0095603	Golden flower (diploid) 3	64.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.743
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.949
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.762
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.623
	CNS0095610	Silvery flower (tetraploid) 1	59.023
	CNS0095611	Silvery flower (tetraploid) 2	54.458
	CNS0095612	Silvery flower (tetraploid) 3	53.359
	CNS0095613	Golden flower (tetraploid) 1	50.412
	CNS0095614	Golden flower (tetraploid) 2	61.225
	CNS0095615	Golden flower (tetraploid) 3	89.510
CRA001975	CRR073297	Stem 1	33.905
	CRR073298	Stem 2	34.824
	CRR073299	Stem 3	31.701
	CRR073300	Leaf 1	38.078
	CRR073301	Leaf 2	37.991
	CRR073302	Leaf 3	28.745
	CRR073303	Juvenile bud 1	39.243
	CRR073304	Juvenile bud 2	44.777
	CRR073305	Juvenile bud 3	45.248
	CRR073306	Third green 1	45.716
	CRR073307	Third green 2	35.999
	CRR073308	Third green 3	41.217
	CRR073309	Second white 1	60.617
	CRR073310	Second white 2	60.856
	CRR073311	Second white 3	66.069
	CRR073312	Silver flowering 1	83.601
	CRR073313	Silver flowering 2	79.913
	CRR073314	Silver flowering 3	74.111
	CRR073315	Gold flowering 1	16.530
	CRR073316	Gold flowering 2	23.831
	CRR073317	Gold flowering 3	19.483
	CRR073318	Tawny withering 1	29.841
	CRR073319	Tawny withering 2	34.309
	CRR073320	Tawny withering 3	30.577