Gene detail

Detail information of GWHGAAZE024286

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283575.1	4.10365E-93	PREDICTED: myb-related protein 306 [Vitis vinifera]
Swissprot	tr\|P81392\|MYB06_ANTMA	6E-67	Myb-related protein 306
trEMBL	tr\|F6H5T6\|F6H5T6_VITVI	2E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47557.1}
TAIR10	AT3G28910.1	3E-52	myb domain protein 30

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39466830	39468822	-
GWHAAZE00000007	mRNA	39466830	39468822	-
GWHAAZE00000007	exon	39468690	39468822	-
GWHAAZE00000007	exon	39468337	39468364	-
GWHAAZE00000007	exon	39467913	39467945	-
GWHAAZE00000007	exon	39466830	39467818	-
GWHAAZE00000007	CDS	39468690	39468822	-
GWHAAZE00000007	CDS	39468337	39468364	-
GWHAAZE00000007	CDS	39467913	39467945	-
GWHAAZE00000007	CDS	39467161	39467818	-
GWHAAZE00000007	three_prime_UTR	39466830	39467160	-

Transcript Sequence
>GWHTAAZE024320 ATGGGCAGACCACCTTGCTGTGATAAAATGGGAGTGAAGAAAGGACCATGGACTCCTGAGGAAGATATAATGTTGGTCTCTTATGTTCAAGAAAATGGCCCCGGCAATTGGAGGGCCGTTCCTGCTAAAACTGAAAAGCATCAAGATGAATGTGCTAGTGAATCATATGTCCGAGTCTCACAAGCTAAAAAAAGATGGGCAGCCATAGCTTCGTATCTCCCAGAGAGAACGGACAACGATATAAAGAATTACTGGAATACCCATCTAAAGAAGAAACTCAGGAACCTTCAAACAACCTCTAATAATGGTGGTTCCAAAGAAGGCTATTCAAATTCCCACACAATCTCAAGAGGGCAATGGGAGAAAAAGCTTCAAACCAATATCCACATTGCCAAACAGGCCCTAACAGATGCCCTTTCTCCTCAATTGAGCCCATCAAATGGGCAAAATGGTAATTGCACCATTCCAACCCAAACATGCGCCTATGCGTCAAGCACTGAAAATATAGCAAGATTGCTCAAAGGTTGGATGAGGAACTCTTCATCATCAAGTGATAATGTTGAATATGGTTCAAATTCTAGTGAAATGAGCATTAAGGACAAAAGCAAGAGTGGGGTTGATTTGTCTGAGGCATTTGAGGAGCTGTTTGGCTTTGAGTCTTTTGATTCTTCAAATTCTGATTTTTCTCAGACAAATATGTCTACTGATCAGGGTAGTGGTTTACAAGGGGAGAGCAAACAAGGCCTCAGTTCTCAAGCTCCACTGTCAATGTTTGAGAATTGGTTGCTTGAAGAAGGTGGGGTCCAAGGGAAAGAAGATTTAGCTAATTTCTCGTTTGAGGACTTGTTTTAATTTATCTGATCAGTTTTTGTAGTAAAATGACTTGGCAAGCACGTAATAACATAGGATCGTTAGTAAAATACTGATTAGTACTGCATGTCATGTCCTTTTAACTATAAATTAAAGCTGCTCAAATAAGTTGACAAGTATAACATTGTTCTTGTTTTAACATGGTTACTATGTTCTTGTTTTAACATTGTTAGTAAAAATTGTTGTCGTTAACGTTGGGGTGTTGTGACGCGTTCCTATCATTTGTTTCTTCATCTTCTTTCCCAGGTTGTGACTGTAAATGGAACATTGTTCAGCTAATTATGAATGAATTGAAAATAAATTTGACTTTTTA

Network for GWHGAAZE024286

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	42	4.90E-07
PF00249.32	Myb_DNA-binding	62	89	4.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.218
	SRR3591706	second leaf	10.062
	SRR3591707	mature leaf	5.194
	SRR3591708	Shoot apex	7.384
	SRR3591709	Stem	1.921
	SRR3591710	White floral bud	3.136
	SRR3591711	White flower	1.125
	SRR3591712	Green floral bud	4.761
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.944
	SRR8316896	Juvenile bud stage	7.776
	SRR8316897	Juvenile bud stage	4.330
	SRR8316894	Third green stage	4.694
	SRR8316900	Third green stage	12.040
	SRR8316901	Third green stage	9.765
	SRR8316898	Complete white stage	2.259
	SRR8316899	Complete white stage	19.903
	SRR8316903	Complete white stage	2.963
	SRR8316902	Silver flowering stage	0.071
	SRR8316904	Silver flowering stage	0.236
	SRR8316905	Silver flowering stage	0.216
	SRR8316906	Gold flowering stage	0.293
	SRR8316907	Gold flowering stage	0.080
	SRR8316908	Gold flowering stage	0.528
SRP132670	SRR6706286	Control	4.152
	SRR6706287	Light intensity 50%	6.809
	SRR6706288	Light intensity 20%	7.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.390
	CNS0095593	Slightly white alabastrum(diploid) 2	4.130
	CNS0095594	Slightly white alabastrum(diploid) 3	4.359
	CNS0095595	Whole white alabastrum(diploid) 2	2.117
	CNS0095596	Whole white alabastrum(diploid) 3	3.295
	CNS0095597	Whole white alabastrum(diploid) 4	4.720
	CNS0095598	Silvery flower (diploied) 1	2.161
	CNS0095599	Silvery flower (diploied) 2	1.459
	CNS0095600	Silvery flower (diploied) 3	1.100
	CNS0095601	Golden flower (diploid) 1	1.038
	CNS0095602	Golden flower (diploid) 2	0.923
	CNS0095603	Golden flower (diploid) 3	0.934
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.611
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.565
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.929
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.002
	CNS0095610	Silvery flower (tetraploid) 1	0.386
	CNS0095611	Silvery flower (tetraploid) 2	1.616
	CNS0095612	Silvery flower (tetraploid) 3	0.835
	CNS0095613	Golden flower (tetraploid) 1	0.324
	CNS0095614	Golden flower (tetraploid) 2	0.344
	CNS0095615	Golden flower (tetraploid) 3	0.244
CRA001975	CRR073297	Stem 1	5.975
	CRR073298	Stem 2	4.289
	CRR073299	Stem 3	4.310
	CRR073300	Leaf 1	5.128
	CRR073301	Leaf 2	2.982
	CRR073302	Leaf 3	4.229
	CRR073303	Juvenile bud 1	2.860
	CRR073304	Juvenile bud 2	4.422
	CRR073305	Juvenile bud 3	1.930
	CRR073306	Third green 1	0.212
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.020
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.906
	CRR073316	Gold flowering 2	1.362
	CRR073317	Gold flowering 3	0.967
	CRR073318	Tawny withering 1	0.612
	CRR073319	Tawny withering 2	0.532
	CRR073320	Tawny withering 3	0.284