Gene detail

Detail information of GWHGAAZE024280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633855.1	7.1312E-151	PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera]
Swissprot	tr\|O22719\|LHTL3_ARATH	0.000000002	Lysine histidine transporter-like 3
trEMBL	tr\|D7SXB3\|D7SXB3_VITVI	3E-151	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22210.3}
TAIR10	AT3G28960.1	1E-101	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	39219232	39225218	-
GWHAAZE00000007	mRNA	39219232	39225218	-
GWHAAZE00000007	exon	39224858	39225218	-
GWHAAZE00000007	exon	39221179	39221240	-
GWHAAZE00000007	exon	39219232	39219747	-
GWHAAZE00000007	CDS	39224858	39225218	-
GWHAAZE00000007	CDS	39221179	39221240	-
GWHAAZE00000007	CDS	39219232	39219747	-

Transcript Sequence
>GWHTAAZE024314 ATGGCGATATCCGTCATCATGAATCTTGAACTATACTTAGTTGCGACGGGTTTCCTTATCCTCGAAGGGGATAACCTATACAACTTGTTTCCAGGGACGGGGTTCGAAATTGGCGGGATTAGTGTTAGTGGAAGGCAAAGCTTTGTTGTGGTCGTTGGGATAATTGTTTTGCCTACTGTATGGTTGAACAACTTGAGCATTCTCTCTTATATATCGGCCACCGGTGTTCTAGCTTCTGTTATAATTCTTGGGTCAATTTTGTGGGCTGGTGCCTTATATGGAATTGGATTTAAGGAGAAGGGAGAGGCTATAAATTGGAATGGAATTCCAACTGCTGTTAGTTTATATGCATTTTGCTATTGTGCTCATCCTCTTTTTCCTACTCTATACACTTCTATGACAAACCAAAGGCAATTCTCCAAGGTTTTGCTCCTTTGCTTCATTTTCTGTACCGCAACTTACGTTTCAATGGCAGTTTTGGGGTACCTCGTGTTCGGTTCCAATCTACAGTCACAAATAACCTTAAATCTTCCAACAGAAAAGATCAGTTCAAGAGTAGCCATTTGTGTCACTCTCGTCAACCCCATAAATAAATACTCGCTAATGGCAACGCCTATAGTTAACTCTATAGAAAATCGGTTTCAATGCTATTGCTATAAAAGACCATTTAGCCTCTTGGTCAGGACCATCTTAGTGACCAGCAGTGTTGTTGTAGCACTGGCCATCCCCTTCTTCGAGTATCTAATGTCTCTTGTTGGAGCTGTACTAAGTGTTACAGCTTCGATTCTACTTCCTTGTTTTTGCTACTTGAAGATATCAGCCAATTATCAAAGACTAGGATTTGAATTGGTGTTCATAGGGGGAATGATACTAATGGGTGTTTTGGTTTTGATTATTGGTACTTACACTTCATTGGTACAAATAATACAGCATCTTTAA

Network for GWHGAAZE024280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	2	304	1.00E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.155
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.070
	SRR8316897	Juvenile bud stage	0.026
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.129
	SRR8316901	Third green stage	0.148
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.148
	SRR8316903	Complete white stage	0.104
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.001
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	3.885
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.035
	SRR6706288	Light intensity 20%	0.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.123
	CNS0095594	Slightly white alabastrum(diploid) 3	0.069
	CNS0095595	Whole white alabastrum(diploid) 2	0.131
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.034
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.066
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.001
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.099
	CNS0095614	Golden flower (tetraploid) 2	0.067
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.126
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.006
	CRR073301	Leaf 2	0.072
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000