Gene detail

Detail information of GWHGAAZE024247

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263508.2	0	PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera]
COG	YP_007080196.1	8E-28	30S ribosomal protein S1
Swissprot	tr\|P29344\|RR1_SPIOL	3E-24	30S ribosomal protein S1, chloroplastic (Precursor)
trEMBL	tr\|F6HJE6\|F6HJE6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52345.1}
TAIR10	AT1G71720.1	1E-118	Nucleic acid-binding proteins superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38566062	38571693	+
GWHAAZE00000007	mRNA	38566062	38571693	+
GWHAAZE00000007	exon	38566062	38566673	+
GWHAAZE00000007	exon	38566766	38566978	+
GWHAAZE00000007	exon	38568068	38568121	+
GWHAAZE00000007	exon	38568237	38568308	+
GWHAAZE00000007	exon	38569288	38569368	+
GWHAAZE00000007	exon	38569802	38569899	+
GWHAAZE00000007	exon	38570105	38570230	+
GWHAAZE00000007	exon	38570410	38570458	+
GWHAAZE00000007	exon	38571514	38571693	+
GWHAAZE00000007	CDS	38566062	38566673	+
GWHAAZE00000007	CDS	38566766	38566978	+
GWHAAZE00000007	CDS	38568068	38568121	+
GWHAAZE00000007	CDS	38568237	38568308	+
GWHAAZE00000007	CDS	38569288	38569368	+
GWHAAZE00000007	CDS	38569802	38569899	+
GWHAAZE00000007	CDS	38570105	38570230	+
GWHAAZE00000007	CDS	38570410	38570458	+
GWHAAZE00000007	CDS	38571514	38571693	+

Transcript Sequence
>GWHTAAZE024281 ATGCCCACTTTTCTTCATCCCAGTAAGTCTCTCTTCTCTCTCCTCAATTCATCCATAATACCCACAAACAATTTCATTATTACCAGCCCTAATCAGAACAGAGCTATTTCAAGAACCCCCAAATCCCCGCATGCTAAAACCCCAAGTTGTAGTTCAGTTTCATTTTCTGGGTATTGTGGAAACCTGTTTCTTGATAAGAAATATTCAATTTTGAGAAATACCCATGTGTTTTTATGCTCAAAGAATGATGTTCTTGCTGAATTTACAAATACCTATTTGCCACAAGAGCAAGAAAATGAGAGGGTTCAAGAGGTTGAAGAGCTTGAATTGAGGGTTAAGCCCTCTCCAAAGAAAGTAACTAACAATGTGTCTGTGGTAGATGAAGAGGTTGAACAAAAAAAGCCCAATAAAGAGGAGGTTTTAGAGCCCTTCTTGAAGTTCTTTAGAGAAGACTCAATAGAACAATCAAGTGATTCAGAACAATTAGTTGATGAACAAAGTTCAATTAATGAAGTGATTAGGGCTAAGAAGGTTTTGGTTGAGTACTATGACCCTAAACCAGGCGATTTTGTCATTGGGGTAGTGGTTTCGGGCAATGATAATAAACTTGATGAAAAGGATGCTGAGGAATTCATGGTAAAAGGGAAGATGGGAATTGTGAGGAATGAGGAGGGGATTATGAGTGGACAAGCAGTGCCAGGTAGGCCTGTGGTGGAGCCCGGGACTGTATTATTTGCTGAGGTTCTTGGAAGAACGCTTAGTGGGAGGCCGTTGATCTCTACGAGACGGTTCTTTCGTCGGTTAGCTTGGCATCGAGTGAGGCAGATTAAGCAGCTCAATGAACCTTTAGAAGTAAAATTACAGAGTGGAATACTGGAGGGTTTACGAGCTTTTCTTCCAAAAGCTGAGTTGATAAATAGAGTTAACAGCTTCACGGAGCTAAAAGAAAATGTGGGAAGGCGGTTATATGTGCAGATTACTAGAATAGAAGAAACTACCAATGACTTAATTCTTAGCGAGAAAGAAGCTTGGAGTTTGAGACACCTTACGGTGGGAACACTTTTGGAAGGAACAGTAAAGAAACTTTATCCATATGGTGCTCAAATAAGAATAGGCGAAAGTAACAGAAGTGGGTTGCTGCATATCTCAAACATAACTAGAGCCCGGGTTACTTCTGTCAGTGACTTGTTGGCAGTTGATGAGAAGGTTAAAGTTTTGGTTATAAAGTCGATGTTTCCGGATAAAATCTCTCTCAGTATTGCAGAGCTTGAAAGTGAGCCTGGCTTATTTATGTCAAACAAAGAGAGAGTATTTTCCGAAGCCGAAGAAATGGCCAAGAAGTACAGGCAGAAGCTACCTGCTGTTTCAGCATCAACCACTAAGTTAGAACCCGTTCCAAACAATGCCTTATCTTACGAAGACGAATCAAACTTGTATTCAAATTGGAAATGGTTCATATTCGAAAGGAATAACGAACAAAAGTAA

Network for GWHGAAZE024247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.24	S1	350	410	4.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02945	RP-S1, rpsA	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.943
	SRR3591706	second leaf	33.192
	SRR3591707	mature leaf	28.574
	SRR3591708	Shoot apex	23.968
	SRR3591709	Stem	8.523
	SRR3591710	White floral bud	6.808
	SRR3591711	White flower	12.800
	SRR3591712	Green floral bud	10.004
	SRR3591713	Yellow flower	7.311
SRP173429	SRR8316895	Juvenile bud stage	6.625
	SRR8316896	Juvenile bud stage	7.975
	SRR8316897	Juvenile bud stage	5.721
	SRR8316894	Third green stage	3.495
	SRR8316900	Third green stage	10.392
	SRR8316901	Third green stage	7.816
	SRR8316898	Complete white stage	2.439
	SRR8316899	Complete white stage	9.997
	SRR8316903	Complete white stage	4.487
	SRR8316902	Silver flowering stage	3.034
	SRR8316904	Silver flowering stage	5.355
	SRR8316905	Silver flowering stage	2.272
	SRR8316906	Gold flowering stage	6.612
	SRR8316907	Gold flowering stage	6.477
	SRR8316908	Gold flowering stage	6.953
SRP132670	SRR6706286	Control	4.153
	SRR6706287	Light intensity 50%	3.742
	SRR6706288	Light intensity 20%	3.696
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.896
	CNS0095593	Slightly white alabastrum(diploid) 2	5.701
	CNS0095594	Slightly white alabastrum(diploid) 3	4.762
	CNS0095595	Whole white alabastrum(diploid) 2	5.593
	CNS0095596	Whole white alabastrum(diploid) 3	4.839
	CNS0095597	Whole white alabastrum(diploid) 4	3.169
	CNS0095598	Silvery flower (diploied) 1	9.776
	CNS0095599	Silvery flower (diploied) 2	10.593
	CNS0095600	Silvery flower (diploied) 3	8.425
	CNS0095601	Golden flower (diploid) 1	8.605
	CNS0095602	Golden flower (diploid) 2	6.621
	CNS0095603	Golden flower (diploid) 3	7.261
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.589
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.681
	CNS0095610	Silvery flower (tetraploid) 1	10.283
	CNS0095611	Silvery flower (tetraploid) 2	9.509
	CNS0095612	Silvery flower (tetraploid) 3	5.477
	CNS0095613	Golden flower (tetraploid) 1	6.189
	CNS0095614	Golden flower (tetraploid) 2	7.798
	CNS0095615	Golden flower (tetraploid) 3	4.992
CRA001975	CRR073297	Stem 1	6.432
	CRR073298	Stem 2	6.655
	CRR073299	Stem 3	3.933
	CRR073300	Leaf 1	4.391
	CRR073301	Leaf 2	4.405
	CRR073302	Leaf 3	2.577
	CRR073303	Juvenile bud 1	1.964
	CRR073304	Juvenile bud 2	1.323
	CRR073305	Juvenile bud 3	1.000
	CRR073306	Third green 1	0.508
	CRR073307	Third green 2	0.488
	CRR073308	Third green 3	0.780
	CRR073309	Second white 1	0.475
	CRR073310	Second white 2	0.785
	CRR073311	Second white 3	0.652
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.680
	CRR073315	Gold flowering 1	10.667
	CRR073316	Gold flowering 2	17.518
	CRR073317	Gold flowering 3	3.463
	CRR073318	Tawny withering 1	3.112
	CRR073319	Tawny withering 2	3.329
	CRR073320	Tawny withering 3	3.113