Gene detail

Detail information of GWHGAAZE024233

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007019585.1	0	Serine/threonine-protein kinase [Theobroma cacao]
COG	YP_003371239.1	3E-27	serine/threonine protein kinase
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	1E-129	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|A0A061FHJ9\|A0A061FHJ9_THECC	0	Serine/threonine-protein kinase {ECO:0000313\|EMBL:EOY16810.1}
TAIR10	AT1G54610.3	2E-112	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38204068	38211632	-
GWHAAZE00000007	mRNA	38204068	38211632	-
GWHAAZE00000007	exon	38204068	38204334	-
GWHAAZE00000007	exon	38205677	38205785	-
GWHAAZE00000007	exon	38205999	38206056	-
GWHAAZE00000007	exon	38207678	38207876	-
GWHAAZE00000007	exon	38208332	38208649	-
GWHAAZE00000007	exon	38208915	38209199	-
GWHAAZE00000007	exon	38210633	38210782	-
GWHAAZE00000007	exon	38211303	38211632	-
GWHAAZE00000007	CDS	38211303	38211632	-
GWHAAZE00000007	CDS	38210633	38210782	-
GWHAAZE00000007	CDS	38208915	38209199	-
GWHAAZE00000007	CDS	38208332	38208649	-
GWHAAZE00000007	CDS	38207678	38207876	-
GWHAAZE00000007	CDS	38205999	38206056	-
GWHAAZE00000007	CDS	38205677	38205785	-
GWHAAZE00000007	CDS	38204068	38204334	-

Transcript Sequence
>GWHTAAZE024267 ATGAATTCTCCAACTAGGGGCCTAGAAAAACTAAAATTGGAAAATGGGTATGGCAAACGCGGGTCCGCCGGACCTAAAAAACCGGCGGGCCCAAGGCCTCTTTCGAGGCCAGAGTCGAAGAATAGTAGTGCTGGTGGCAGTGATGCTAAAGGTAAGGTAGTCAGAAGTGGCCGTGGTGGGAGCGGTGGTTTGGAGAGGGTGACGTCAAAATCCGGCGGGGAGGATGAGTTGGTGGGTGGGTGGCCAAAGTGGCTTACTGATAATATTCCTAGAGAGGCATTGGCTGGTTTGGTTCCTAGGAGTGCTGAGACTTATGATAAACTTGACAAGGTGACCAGAGTACCAGGCTACCAGCTATGGAGTCCTGCCGTGCCGACGTGCCGTCGTCTCGCCGTGGTGGTGAAGAATGAACGGAGATTTGGAGAACAAGAGAAGTGTGGGACGGGTTTGATTTTGAGAGGATGGACTGTGCGTGAGGCGGTGGGCCAAGGAACTTATAGCAATGTGTATAAAGCTCGCGACAGAGAAACCGGAAAAATCGTTGCCCTTAAAAAGGTTCGATTCGACAAATCAGAACCGGAGAGCGTAAAATTTATGGCCAGAGAAATCGCGATTTTAAGGAAGTTAGATCATCCAAATATAATCAAGCTTGAAGGATTGGCTACATCAAGAATGCAATATAGTTTGTATTTGGTTTTTGATTACATGCAAACTGATTTGTACAAGATCATCTCCAGGCCTGATGAAAGGCTTACCGAACCGCAGGTAAAGTGTTACATGCAACAACTACTATCGGGTCTACAACACTGCCACGATCGCGGGATTTTGCACCGAGACATTAAGGGATCGAATTTATTGATCGATAGAAATGGGATGCTAAAGATTGCTGATTGGGGACTTGCAAATTCTTTCAATCCAAATAAAAAGAGGCCTCTCACAAACAGAGTGGTCACATTGTGGTATAGAGCACCAGAGCTATTGTTAGATGCTACAGATTATGGACCTGGTATTGATCTTTGGAGTGCTGGTTGTCTTTTGGCTGAAATGTTTGTTGGAAGACCAATTTTGCCTGGAAGAACTGAGGTGGAGCAACTACATAGGATATTCAAGTTATGTGGGACACCAACAGAAGATTACTGGAAAAGAAGTAAAGTGCCAACAACATTTAGGCCACCACGCTCTTACAAGCCTAACCTTGTTGAATCTTTTAGGGACTTTCCTTCTTGTTTGGGTCTTTTGCAAATCCTTCTTTCTATTGATCCAGCATGCCGTGCCTGTGCAGGTTTACCTGTAACCTACGTCGAGGATGACAATACTTATCAAACAAGCGACCGAAGAAGGCATAGAAACTCTAAAATGAGACGGCGGTCCAAAACACTAGAAGAGCGCCGGAGAAAAGACCAACCTACACAATTACCACAAGACGCAGATTCTTCTTCTTTGAAAGAGGAGCAAGTGAAGAGTGAGGATCAACCTGCAACTCTTCAAAGCCAAGATCTTGATGGAAGTACAAGTAGCACACTATCTAAGTCAAAGTCAACCCAAAAACAAGAGGCCCCACCCCTCCCCCCAATACCACCTTTATTCTCACCAGAAATTTCCCCAAGAAGTGAAGCTCACCGTCATGCTACCAAGAACATAAAGAGTAGACCTCCCTGCCCAATTCAAGAACAAGGTCCACAAGGTACAACGATGACAGCGAAATGTACAAATTGA

Network for GWHGAAZE024233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	157	425	2.00E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.066
	SRR3591706	second leaf	0.041
	SRR3591707	mature leaf	0.751
	SRR3591708	Shoot apex	0.128
	SRR3591709	Stem	0.226
	SRR3591710	White floral bud	0.128
	SRR3591711	White flower	0.292
	SRR3591712	Green floral bud	0.494
	SRR3591713	Yellow flower	0.142
SRP173429	SRR8316895	Juvenile bud stage	0.264
	SRR8316896	Juvenile bud stage	0.491
	SRR8316897	Juvenile bud stage	0.692
	SRR8316894	Third green stage	0.118
	SRR8316900	Third green stage	0.941
	SRR8316901	Third green stage	0.864
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.156
	SRR8316903	Complete white stage	0.026
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.269
	SRR6706287	Light intensity 50%	0.223
	SRR6706288	Light intensity 20%	0.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.463
	CNS0095593	Slightly white alabastrum(diploid) 2	0.660
	CNS0095594	Slightly white alabastrum(diploid) 3	1.038
	CNS0095595	Whole white alabastrum(diploid) 2	0.817
	CNS0095596	Whole white alabastrum(diploid) 3	0.580
	CNS0095597	Whole white alabastrum(diploid) 4	0.376
	CNS0095598	Silvery flower (diploied) 1	0.601
	CNS0095599	Silvery flower (diploied) 2	0.168
	CNS0095600	Silvery flower (diploied) 3	0.121
	CNS0095601	Golden flower (diploid) 1	0.247
	CNS0095602	Golden flower (diploid) 2	0.093
	CNS0095603	Golden flower (diploid) 3	0.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.991
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.721
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.172
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.002
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	0.178
	CRR073298	Stem 2	0.186
	CRR073299	Stem 3	0.424
	CRR073300	Leaf 1	0.501
	CRR073301	Leaf 2	0.579
	CRR073302	Leaf 3	0.433
	CRR073303	Juvenile bud 1	0.025
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.094
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	0.053
	CRR073316	Gold flowering 2	0.100
	CRR073317	Gold flowering 3	0.072
	CRR073318	Tawny withering 1	0.042
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000