Gene detail

Detail information of GWHGAAZE024228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009586787.1	2.5931E-172	PREDICTED: peroxidase 12-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q96520\|PER12_ARATH	5E-150	Peroxidase 12 (Precursor)
trEMBL	tr\|Q94IQ1\|Q94IQ1_TOBAC	1E-172	Peroxidase {ECO:0000313\|EMBL:AAK52084.1}
TAIR10	AT1G71695.1	9E-121	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38089748	38094875	+
GWHAAZE00000007	mRNA	38089748	38094875	+
GWHAAZE00000007	exon	38089748	38089766	+
GWHAAZE00000007	exon	38089943	38090019	+
GWHAAZE00000007	exon	38090600	38090794	+
GWHAAZE00000007	exon	38094225	38094875	+
GWHAAZE00000007	CDS	38089748	38089766	+
GWHAAZE00000007	CDS	38089943	38090019	+
GWHAAZE00000007	CDS	38090600	38090794	+
GWHAAZE00000007	CDS	38094225	38094875	+

Transcript Sequence
>GWHTAAZE024262 ATGGCTTCCACTACTGCAACTCAAAAAGTGTTCAAGAAGGATATTGGCCAAGCTGCTGCCTTGCTTCGCATCCATTTTCATGATTGCTTTGTTCAGGGATGTGATGCATCAGTGCTATTAGATGGATCGGCTAGTGGACCGGGTGAGAAGGCAGCCCCTCCAAACTTGAGTCTAAGAGCCGAGGCATTTAGGATCATTGATGATCTTCGCCGTCGTGCACAAAAGGAGTGTGGTAAGATTGTCTCTTGTGCTGATATCACTGCTCTCGCTGCCCGTGATGCAGTTTACTTGTCTGGTGGGCCGGATTACAACGTCCCCTTAGGAAGACGCGATTCACTAAGGTTTGCAACAAGAAACGTAACCCTTGCCAACCTCCCCCCACCAACAGCTAATGCAAGTGTGATCCTCACCTCTCTCGCCACCAAAAACTTCAACCCAACCGATGTAGTTGCCCTCTCTGGAGCTCACACCATCGGCATCAGCCACTGTACATCCTTCACACCTCGCTTGTACCCAAACCAAGACCCCACCATGGATAAGACCTTTGCCAACAATCTCAAGGGCGTTTGCCCCACTAGAAACTCCACTAACACCACCATCATGGATATCCGTTCACCAAACCTCTTCGACAACAAGTACTACGTTGATCTTATGAATCGTCAGGGTCTTTTCACGTCTGACCAAGACTTGTACACTGATAAGAGGACTAGGGAGATTGTTAGGAGCTTTGCGGTTAATCAGACGCTTTTCTTTGAAAAGTTTGTTACTGCAATGATTAAGATGGGGCAACTTAGTGTGTTGACAGGGACACAAGGAGAAATTCGTGGGAATTGTTCAGCTAGAAATTCTGGAAGATCAGTTACGTTGTCTATATTGGAAGAGGAGCAAAAGGCTGGTCCGAGTTTTGAGTGTTTCTTACCTATATTATGTTTGTCTTGCTAG

Network for GWHGAAZE024228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	7	245	1.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.379
	SRR3591706	second leaf	64.815
	SRR3591707	mature leaf	21.678
	SRR3591708	Shoot apex	80.419
	SRR3591709	Stem	16.558
	SRR3591710	White floral bud	10.725
	SRR3591711	White flower	7.075
	SRR3591712	Green floral bud	32.566
	SRR3591713	Yellow flower	0.169
SRP173429	SRR8316895	Juvenile bud stage	37.695
	SRR8316896	Juvenile bud stage	30.929
	SRR8316897	Juvenile bud stage	7.473
	SRR8316894	Third green stage	13.513
	SRR8316900	Third green stage	27.421
	SRR8316901	Third green stage	27.167
	SRR8316898	Complete white stage	1.474
	SRR8316899	Complete white stage	26.214
	SRR8316903	Complete white stage	4.006
	SRR8316902	Silver flowering stage	0.265
	SRR8316904	Silver flowering stage	0.697
	SRR8316905	Silver flowering stage	0.213
	SRR8316906	Gold flowering stage	0.257
	SRR8316907	Gold flowering stage	0.149
	SRR8316908	Gold flowering stage	0.007
SRP132670	SRR6706286	Control	20.283
	SRR6706287	Light intensity 50%	21.095
	SRR6706288	Light intensity 20%	22.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.154
	CNS0095593	Slightly white alabastrum(diploid) 2	24.352
	CNS0095594	Slightly white alabastrum(diploid) 3	27.693
	CNS0095595	Whole white alabastrum(diploid) 2	16.021
	CNS0095596	Whole white alabastrum(diploid) 3	11.179
	CNS0095597	Whole white alabastrum(diploid) 4	8.947
	CNS0095598	Silvery flower (diploied) 1	18.432
	CNS0095599	Silvery flower (diploied) 2	15.726
	CNS0095600	Silvery flower (diploied) 3	8.015
	CNS0095601	Golden flower (diploid) 1	24.977
	CNS0095602	Golden flower (diploid) 2	12.480
	CNS0095603	Golden flower (diploid) 3	10.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.970
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.009
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.080
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.558
	CNS0095610	Silvery flower (tetraploid) 1	0.124
	CNS0095611	Silvery flower (tetraploid) 2	2.688
	CNS0095612	Silvery flower (tetraploid) 3	1.266
	CNS0095613	Golden flower (tetraploid) 1	0.201
	CNS0095614	Golden flower (tetraploid) 2	0.054
	CNS0095615	Golden flower (tetraploid) 3	0.086
CRA001975	CRR073297	Stem 1	111.961
	CRR073298	Stem 2	88.980
	CRR073299	Stem 3	125.853
	CRR073300	Leaf 1	53.319
	CRR073301	Leaf 2	65.620
	CRR073302	Leaf 3	74.680
	CRR073303	Juvenile bud 1	36.908
	CRR073304	Juvenile bud 2	27.022
	CRR073305	Juvenile bud 3	38.711
	CRR073306	Third green 1	1.226
	CRR073307	Third green 2	2.257
	CRR073308	Third green 3	1.183
	CRR073309	Second white 1	0.168
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.079
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.126
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	55.150
	CRR073316	Gold flowering 2	49.791
	CRR073317	Gold flowering 3	67.465
	CRR073318	Tawny withering 1	50.215
	CRR073319	Tawny withering 2	30.985
	CRR073320	Tawny withering 3	51.214