Gene detail

Detail information of GWHGAAZE024225

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009803971.1	5.9692E-163	PREDICTED: leucine-rich repeat receptor protein kinase EXS [Nicotiana sylvestris]
COG	YP_003266417.1	3E-22	serine/threonine protein kinase
Swissprot	tr\|Q9LYN8\|EXS_ARATH	4E-80	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|F6GY59\|F6GY59_VITVI	4E-161	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44895.1}
TAIR10	AT5G42440.1	1E-107	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	38035923	38037378	+
GWHAAZE00000007	mRNA	38035923	38037378	+
GWHAAZE00000007	exon	38035923	38036151	+
GWHAAZE00000007	exon	38036624	38037378	+
GWHAAZE00000007	CDS	38035923	38036151	+
GWHAAZE00000007	CDS	38036624	38037378	+

Transcript Sequence
>GWHTAAZE024259 ATGGATATCAGAGAGAGCGCGTCGTTTGACCCGTCGTTGAGCCGGATCTCGATGCCTGAGCTCCTCAAGGCCACTCGGAACTTCGCCGCCGATCTTATCATCGGCGACGGCAGCTTCGGACTGGTGTACAAGGCGAATCTGTCCAACGGCGCCACCGTCGCTGTCAAAAGGCTCAGCCCCGACGCTTTTCAAGGATTCCGAGAGTTTCGCGCCGAGATGGAAACACTAGGTAAGATCCAACACCATAACATAGTCAAAATCCTTGGGTACTACTCGTCAGGTTTTGACCGCATCCTGATTTATGAGTTTGTCCAGAAGGGGAGCCTCGACCAATGGCTGCACGACACGTCTTCATCATCGGAGGACCCTTCAATGTCAATCCCGATATTACCGTTATCTTGGGATACAAGAATTAACATAATCAAAGGTGTGGCCAAAGGGCTATGTTATATGCATAATTTGGACACACCAATAATTCATAGGGACATCAAGGCTAGTAATGTGTTGTTAGATTCCAATTTTGAGGCACATATTGCTGATTTTGGGTTAGCTAGGAGGATAGAAGGGTCCCACTCACACGTGTCGACACAAGTGGCTGGTACTATGGGGTACATGCCGCCAGAGTATATTAATGGTAATACAATGGCGACTGTAACCGGAGATGTATACAGCTTTGGAATTCTTATGTTAGAAATCGCTTCTGGAAGACGGCCTAACTGGCCGTTCAAAGAGGGGGATGGGAAGGAAATAGGATTAGTCCAGTGGGCTAAGAATATGATGGAGCAGAATCGACATATAGAAATGGTTGATGCTAATATCATGAAAGATGACTTGAAAGAAGAGGATGTTTTAGAGTTTTTTAGGATTGCTATGTTGTGCGCTAGCGAGAGCTCGAGATATAGGCCTACAATGAAGAAAGTTGTTGAGTCACTTGATCGTATTTCGACTTCAAATTATACTTCCAAGAATGATGACATGGTTTGA

Network for GWHGAAZE024225

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	33	309	1.40E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.858
	SRR3591706	second leaf	5.397
	SRR3591707	mature leaf	9.477
	SRR3591708	Shoot apex	7.179
	SRR3591709	Stem	10.482
	SRR3591710	White floral bud	9.292
	SRR3591711	White flower	12.200
	SRR3591712	Green floral bud	6.554
	SRR3591713	Yellow flower	13.183
SRP173429	SRR8316895	Juvenile bud stage	7.593
	SRR8316896	Juvenile bud stage	6.045
	SRR8316897	Juvenile bud stage	5.493
	SRR8316894	Third green stage	3.179
	SRR8316900	Third green stage	5.261
	SRR8316901	Third green stage	7.407
	SRR8316898	Complete white stage	4.440
	SRR8316899	Complete white stage	23.647
	SRR8316903	Complete white stage	8.492
	SRR8316902	Silver flowering stage	7.313
	SRR8316904	Silver flowering stage	6.472
	SRR8316905	Silver flowering stage	3.579
	SRR8316906	Gold flowering stage	14.256
	SRR8316907	Gold flowering stage	14.249
	SRR8316908	Gold flowering stage	20.150
SRP132670	SRR6706286	Control	11.975
	SRR6706287	Light intensity 50%	11.206
	SRR6706288	Light intensity 20%	11.406
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.231
	CNS0095593	Slightly white alabastrum(diploid) 2	7.496
	CNS0095594	Slightly white alabastrum(diploid) 3	8.080
	CNS0095595	Whole white alabastrum(diploid) 2	5.495
	CNS0095596	Whole white alabastrum(diploid) 3	3.243
	CNS0095597	Whole white alabastrum(diploid) 4	5.767
	CNS0095598	Silvery flower (diploied) 1	15.730
	CNS0095599	Silvery flower (diploied) 2	18.009
	CNS0095600	Silvery flower (diploied) 3	14.165
	CNS0095601	Golden flower (diploid) 1	16.868
	CNS0095602	Golden flower (diploid) 2	23.732
	CNS0095603	Golden flower (diploid) 3	23.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.874
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.627
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.619
	CNS0095610	Silvery flower (tetraploid) 1	18.220
	CNS0095611	Silvery flower (tetraploid) 2	19.382
	CNS0095612	Silvery flower (tetraploid) 3	24.269
	CNS0095613	Golden flower (tetraploid) 1	11.166
	CNS0095614	Golden flower (tetraploid) 2	15.015
	CNS0095615	Golden flower (tetraploid) 3	15.095
CRA001975	CRR073297	Stem 1	8.698
	CRR073298	Stem 2	7.441
	CRR073299	Stem 3	8.433
	CRR073300	Leaf 1	7.492
	CRR073301	Leaf 2	10.342
	CRR073302	Leaf 3	11.895
	CRR073303	Juvenile bud 1	9.055
	CRR073304	Juvenile bud 2	9.972
	CRR073305	Juvenile bud 3	8.662
	CRR073306	Third green 1	5.398
	CRR073307	Third green 2	4.523
	CRR073308	Third green 3	5.712
	CRR073309	Second white 1	2.449
	CRR073310	Second white 2	4.001
	CRR073311	Second white 3	3.162
	CRR073312	Silver flowering 1	4.883
	CRR073313	Silver flowering 2	4.855
	CRR073314	Silver flowering 3	4.374
	CRR073315	Gold flowering 1	8.381
	CRR073316	Gold flowering 2	18.469
	CRR073317	Gold flowering 3	11.175
	CRR073318	Tawny withering 1	13.253
	CRR073319	Tawny withering 2	14.230
	CRR073320	Tawny withering 3	9.120