Gene detail

Detail information of GWHGAAZE024224

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009586787.1	0	PREDICTED: peroxidase 12-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q96520\|PER12_ARATH	5E-159	Peroxidase 12 (Precursor)
trEMBL	tr\|Q94IQ1\|Q94IQ1_TOBAC	0	Peroxidase {ECO:0000313\|EMBL:AAK52084.1}
TAIR10	AT1G71695.1	4E-123	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37931999	37936726	-
GWHAAZE00000007	mRNA	37931999	37936726	-
GWHAAZE00000007	exon	37936478	37936726	-
GWHAAZE00000007	exon	37935027	37935221	-
GWHAAZE00000007	exon	37931999	37932616	-
GWHAAZE00000007	CDS	37936478	37936726	-
GWHAAZE00000007	CDS	37935027	37935221	-
GWHAAZE00000007	CDS	37931999	37932616	-

Transcript Sequence
>GWHTAAZE024258 ATGGCTTCTTTAAGCTCTTCACTCTTATTGTTCATATGCTGCATTTTACTATTATTATCTTCTTCACATTTGTATGTTGTAGAGGCTCAAAGCCCACCCATAGTGGAAGGACTCTCATGGGATTTTTATAAAACAACTTGCCCTAATTTGGAATCCATTATTAGGGAAGAGCTGCAAAAAGTGTTCGAGGAAGATATTGGCCAAGCTGCTGGCTTGCTTCGCCTCCATTTCCATGATTGCTTTGTTCAGGGATGCGATGCATCAGTGCTATTAGATGGATCAGCCAGTGAACCGGGTGAGCAAGAGGCCCCTCCAAACTTGACTCTTAGTCCAAGAGCATTGAGGATCATTGATGATCTTCGTCGTCGTGCACAAGAAGAGTGTGGAAGGATTGTCTCTTGTGCTGATATCACCGCTATCGCTGCCCGTGATGCAGTTTACTTGTCTGGAGGACCTAATTACAGCATTCCTTTGGGAAGACGTGACTCACTAACCTTTGCAACAAGAAACGAAACCCTTGCCAACATTCCTCCACCAACAGCAAACGCAAGTGCGATTCTCACCTTGTTCGCCAACAAAAGCTTTGACCCAACTGATGTGGTCGCCCTCTCCGGGGCTCACACCATCGGCATTAGCCATTGCACATCCTTCACGCCTCGCCTGTACCCAAACCAAGACCCCACTATGGACAAGACCCTTGCCAACAATCTCAAGGACGTTTGCCCTACTCAAAACTCCACCAACACCACCATCATGGATATTCGATCACCAACCCTCTTTGACAACAAGTACTACGTTGGTCTTATGAATCGGCAGGGCCTCTTCACGTCTGACCAAGACTTGTACACTGATAGGAGGACTAGGGGGATTGTTACGAGCTTTGCGGTAAATCAAACGCTTTTCTTTGAAAAGTTTGTTTTTGCAATGATTAAAATGGGGCAACTGAGCGTGCTAACCGGGACACAAGGAGAAATTCGTGGGAATTGTTCAGCTACAAATCCGGGTATATCAGCTACATTGTCTATATTGGAAGAGGAGCAGAGGGGCTGGTTCAAGTTTTGA

Network for GWHGAAZE024224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	55	296	1.50E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.393
	SRR3591706	second leaf	24.589
	SRR3591707	mature leaf	16.206
	SRR3591708	Shoot apex	126.556
	SRR3591709	Stem	1.045
	SRR3591710	White floral bud	13.842
	SRR3591711	White flower	26.996
	SRR3591712	Green floral bud	11.537
	SRR3591713	Yellow flower	1.443
SRP173429	SRR8316895	Juvenile bud stage	15.405
	SRR8316896	Juvenile bud stage	9.050
	SRR8316897	Juvenile bud stage	5.177
	SRR8316894	Third green stage	2.971
	SRR8316900	Third green stage	12.005
	SRR8316901	Third green stage	8.917
	SRR8316898	Complete white stage	26.426
	SRR8316899	Complete white stage	38.237
	SRR8316903	Complete white stage	27.171
	SRR8316902	Silver flowering stage	13.735
	SRR8316904	Silver flowering stage	19.074
	SRR8316905	Silver flowering stage	16.104
	SRR8316906	Gold flowering stage	18.643
	SRR8316907	Gold flowering stage	32.722
	SRR8316908	Gold flowering stage	15.430
SRP132670	SRR6706286	Control	100.634
	SRR6706287	Light intensity 50%	69.960
	SRR6706288	Light intensity 20%	36.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.216
	CNS0095593	Slightly white alabastrum(diploid) 2	11.656
	CNS0095594	Slightly white alabastrum(diploid) 3	10.885
	CNS0095595	Whole white alabastrum(diploid) 2	5.703
	CNS0095596	Whole white alabastrum(diploid) 3	5.088
	CNS0095597	Whole white alabastrum(diploid) 4	6.214
	CNS0095598	Silvery flower (diploied) 1	35.535
	CNS0095599	Silvery flower (diploied) 2	13.855
	CNS0095600	Silvery flower (diploied) 3	23.973
	CNS0095601	Golden flower (diploid) 1	7.538
	CNS0095602	Golden flower (diploid) 2	14.390
	CNS0095603	Golden flower (diploid) 3	14.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.917
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.739
	CNS0095610	Silvery flower (tetraploid) 1	6.295
	CNS0095611	Silvery flower (tetraploid) 2	19.291
	CNS0095612	Silvery flower (tetraploid) 3	25.166
	CNS0095613	Golden flower (tetraploid) 1	2.664
	CNS0095614	Golden flower (tetraploid) 2	1.409
	CNS0095615	Golden flower (tetraploid) 3	28.832
CRA001975	CRR073297	Stem 1	84.366
	CRR073298	Stem 2	70.758
	CRR073299	Stem 3	125.157
	CRR073300	Leaf 1	21.431
	CRR073301	Leaf 2	25.639
	CRR073302	Leaf 3	31.130
	CRR073303	Juvenile bud 1	17.011
	CRR073304	Juvenile bud 2	84.438
	CRR073305	Juvenile bud 3	40.331
	CRR073306	Third green 1	20.172
	CRR073307	Third green 2	14.374
	CRR073308	Third green 3	17.167
	CRR073309	Second white 1	22.223
	CRR073310	Second white 2	6.180
	CRR073311	Second white 3	5.990
	CRR073312	Silver flowering 1	7.833
	CRR073313	Silver flowering 2	8.089
	CRR073314	Silver flowering 3	5.961
	CRR073315	Gold flowering 1	3.005
	CRR073316	Gold flowering 2	5.104
	CRR073317	Gold flowering 3	6.495
	CRR073318	Tawny withering 1	1.364
	CRR073319	Tawny withering 2	4.577
	CRR073320	Tawny withering 3	0.424