Gene detail

Detail information of GWHGAAZE024219

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008785851.1	PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform X2 [Phoenix dactylifera]
COG	YP_003998211.1	ribonucleoside-diphosphate reductase subunit alpha
Swissprot	tr\|Q9SJ20\|RIR1_ARATH	Ribonucleoside-diphosphate reductase large subunit {ECO:0000303\|PubMed:10542051}
trEMBL	tr\|M0RTG4\|M0RTG4_MUSAM	Ribonucleoside-diphosphate reductase {ECO:0000256\|RuleBase:RU003410}
TAIR10	AT2G21790.1	ribonucleotide reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37717674	37724910	+
GWHAAZE00000007	mRNA	37717674	37724910	+
GWHAAZE00000007	exon	37717674	37717919	+
GWHAAZE00000007	exon	37718426	37718487	+
GWHAAZE00000007	exon	37718584	37718671	+
GWHAAZE00000007	exon	37718882	37719145	+
GWHAAZE00000007	exon	37719824	37720064	+
GWHAAZE00000007	exon	37720405	37720481	+
GWHAAZE00000007	exon	37720603	37720773	+
GWHAAZE00000007	exon	37721113	37721205	+
GWHAAZE00000007	exon	37721275	37721424	+
GWHAAZE00000007	exon	37721708	37721794	+
GWHAAZE00000007	exon	37721924	37722088	+
GWHAAZE00000007	exon	37722172	37722291	+
GWHAAZE00000007	exon	37723391	37723593	+
GWHAAZE00000007	exon	37723693	37723842	+
GWHAAZE00000007	exon	37723930	37724077	+
GWHAAZE00000007	exon	37724431	37724517	+
GWHAAZE00000007	exon	37724812	37724910	+
GWHAAZE00000007	CDS	37717674	37717919	+
GWHAAZE00000007	CDS	37718426	37718487	+
GWHAAZE00000007	CDS	37718584	37718671	+
GWHAAZE00000007	CDS	37718882	37719145	+
GWHAAZE00000007	CDS	37719824	37720064	+
GWHAAZE00000007	CDS	37720405	37720481	+
GWHAAZE00000007	CDS	37720603	37720773	+
GWHAAZE00000007	CDS	37721113	37721205	+
GWHAAZE00000007	CDS	37721275	37721424	+
GWHAAZE00000007	CDS	37721708	37721794	+
GWHAAZE00000007	CDS	37721924	37722088	+
GWHAAZE00000007	CDS	37722172	37722291	+
GWHAAZE00000007	CDS	37723391	37723593	+
GWHAAZE00000007	CDS	37723693	37723842	+
GWHAAZE00000007	CDS	37723930	37724077	+
GWHAAZE00000007	CDS	37724431	37724517	+
GWHAAZE00000007	CDS	37724812	37724910	+

Transcript Sequence
>GWHTAAZE024253 ATGTATGTTGTAAAGAGAGACGGGCGTAAAGAATCAGTGCACTTTGATAAAATCACAGCCCGTTTGAAGAAGTTGAGTTATGGGCTTAGAGCGGAGCACTGTGATCCGGTGTTAGTTGCCCGGAAGGTTTGTGCTGGTGTTTATAAAGGTGTTACCACCACTCAACTCGATGAATTGGCTGCTGAGACTGCGGCGGCGATGACCACGAATCACCCGGATTATGCGTCCGTATGTTTTCTCTATTGGTTGGCTGCAAGAATTGCAGTTTCAAATTTGCATAAGAACACACAGAAATTGTTTTCAGAGACGATTAAAGTTATGTACAACTATTATGATAAAGGATCAAGGCAGAAGGCTTCTCTTGTTGCTGATGATGTTTACGAAATTATCATGAAGAATGCTTCTCGCATGGACAGCGAGATAATTTACGACAGGGATTTTGGGTATGATTACTTTGGCTTTAAAACTCTTGAAAGATCTTATTTGTTGAAAGTCGATGGGAAAGTTGTGGAAAGGCCACAACACATGTTGATGAGGGTTGCTGTCGGAATCCACAAGGAGGACATAGATTCGGCTATCGAGATGTACCATTTGATGTCTCAGGGTTGGTTCACACATGCTTCTCCAACACTTTTCAATGCTGGAACCCCACGGCCCCAAATGAGTACCTGTTTTCTTGTGTGCATGAAAGACGATAGCATTGATGGAATATATGATACGCTGAAGGAGTGTGTTGTTATTAGCAAATCAACAGGAGGCATTGGTATTTCTGTGCATAATATCCGTGCAACGGGAAGTTACATTCGAGGAACAAATGGGACTTCTAATGGCATTGCTCCGATGCTTCGAGTGTATAATGATACTGCCCGCTATGTTGATCAAGGTGGAGGCAAGAGGAAGGGTGCATTTGCCGTTTATTTGGAGCCATGGCATGCTGATATATTTGACTTTTTAGATCTCAAAAAGAACCGTGGAAAGGAAGAAAACCGGGCTCGAGATCTTTTTTATGCTCTTTGGGTCCCTGACCTTTTTATGAACAGAGTAGAAGGTAATAAAGATTGGTCTTTATTTTGCCCTAGTGAGGCTCCTGGTCTGGCTGACTGTTGGGGTGAGGAATTCGAAAAATTATACGCTCAATATGAGGAAGAGGGAAAGGCGATGAAGGTTGTATCTGCTAGGAAACTATGGACTGAGATCCTTAATTCCCAGATTGAAACAGGAACCCCATATATGCTTTTCAAGGATACTTGCAATCGGAAAAGTAATCAGCAGAACCTGGGTACGATAAAGTCCTCAAACCTGTGCACTGAGATTATTGAATTTTTGAGTCCCACTGAAACTGCAGTTTGTAATCTGTCATCTATTGCTCTACCAAGATTTGTCAGGGAGAAGGGGGTGTCAACTGATCCACAACCGTCCAAGCTGGTTGGAAGTAGGGGTTCTAAGAACCGATATTTTGATTTTGACAAGTTAGCTGAGGTTACTGTAATAGTTACTGCAAACCTCAACAAAATTATCGATATAAATTACTACCCAGTTGAGACCGCTAAAATGTCAAATTTGCTGCATAGACCGATTGGTATTGGAGTTCAAGGCCTTGCTGACACTTTCATCTTGCTAGGGATGGCATTTGATTCACCAGAGGCCCAAAAACTAAATAAAGACATATTTGAGACTATTTATTACCATGCTCTAAAAACTTCTTCAGAGTTGGCTGCAAAAGTTGGCCCCTATCAGACATATCATGGGAGCCCAGTAAGTCAGGGGATTCTTCAAGTAGACATATGGGGTGTACCACCATCAGATCGGTGGGATTGGGTTTTGCTAAGGGAAATGATCTCAAAGAACGGAGTTCGGAATTCCCTTCTATTAGCACCTATGCCTACTGCTTCAACTAGTCAGATTCTTGGCAACAATGAGTGTATTGAACCTTACACTTCCAACATATATAGCTGCAGGGTTTTAAGCGGAGAATTTGTAGTGGTCAACAAACACCTCCTTCATGACTTATCTGAGATGGGTCTTTGGTCGTCTTCTCTTAAGAACAAGATTGTCTATGATAACGGCTCTGTCATGAAAATCCCCGAGATTCCTGAAGAACTGAAAAACATTTACAAGACTATTTGGGAGATCAAGCAAAAGATATTGGTGGATATGGCTGTTGACCGCGGGTGCTATACAGATCAGAGTCAGAGCTTGAATATCCACATGGACCAAGCTGATCATGGGAAGCTTACATCCTTGCATTTCTATACTTGGACCAAGGGTCTGAAAACCGGGATGTATTATCTAAGGACGCAAGTTGCAGCTGATGCAATCAAATTCACCGTTGATACTTCCACTTTAAAAAAAGGGAATGCTAAACGAATGGATGATGATGTCGATTCTAGTATAGCCCAAGTGGTATGTTCACTACAGAATCGAGAAGAATGCATGGCTTGTGGAAGTTAA

Network for GWHGAAZE024219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03477.17	ATP-cone	1	94	5.00E-12
PF00317.22	Ribonuc_red_lgN	149	218	2.20E-24
PF02867.16	Ribonuc_red_lgC	222	763	1.70E-185

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10807	RRM1	Metabolic pathways	map01100
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Glutathione metabolism	map00480
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006260	biological_process	DNA replication
GO:0004748	molecular_function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.651
	SRR3591706	second leaf	0.737
	SRR3591707	mature leaf	0.919
	SRR3591708	Shoot apex	2.898
	SRR3591709	Stem	3.883
	SRR3591710	White floral bud	0.774
	SRR3591711	White flower	0.830
	SRR3591712	Green floral bud	2.736
	SRR3591713	Yellow flower	0.713
SRP173429	SRR8316895	Juvenile bud stage	0.689
	SRR8316896	Juvenile bud stage	1.495
	SRR8316897	Juvenile bud stage	0.397
	SRR8316894	Third green stage	0.505
	SRR8316900	Third green stage	0.865
	SRR8316901	Third green stage	0.827
	SRR8316898	Complete white stage	0.130
	SRR8316899	Complete white stage	1.060
	SRR8316903	Complete white stage	0.482
	SRR8316902	Silver flowering stage	0.361
	SRR8316904	Silver flowering stage	0.543
	SRR8316905	Silver flowering stage	0.220
	SRR8316906	Gold flowering stage	0.738
	SRR8316907	Gold flowering stage	1.063
	SRR8316908	Gold flowering stage	0.834
SRP132670	SRR6706286	Control	0.963
	SRR6706287	Light intensity 50%	1.316
	SRR6706288	Light intensity 20%	1.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.987
	CNS0095593	Slightly white alabastrum(diploid) 2	0.794
	CNS0095594	Slightly white alabastrum(diploid) 3	2.490
	CNS0095595	Whole white alabastrum(diploid) 2	0.749
	CNS0095596	Whole white alabastrum(diploid) 3	0.703
	CNS0095597	Whole white alabastrum(diploid) 4	0.688
	CNS0095598	Silvery flower (diploied) 1	1.706
	CNS0095599	Silvery flower (diploied) 2	0.579
	CNS0095600	Silvery flower (diploied) 3	1.291
	CNS0095601	Golden flower (diploid) 1	1.014
	CNS0095602	Golden flower (diploid) 2	0.971
	CNS0095603	Golden flower (diploid) 3	1.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.665
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.830
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.122
	CNS0095610	Silvery flower (tetraploid) 1	1.668
	CNS0095611	Silvery flower (tetraploid) 2	2.066
	CNS0095612	Silvery flower (tetraploid) 3	1.431
	CNS0095613	Golden flower (tetraploid) 1	0.685
	CNS0095614	Golden flower (tetraploid) 2	1.077
	CNS0095615	Golden flower (tetraploid) 3	0.422
CRA001975	CRR073297	Stem 1	1.534
	CRR073298	Stem 2	0.895
	CRR073299	Stem 3	0.690
	CRR073300	Leaf 1	1.002
	CRR073301	Leaf 2	0.821
	CRR073302	Leaf 3	0.825
	CRR073303	Juvenile bud 1	0.534
	CRR073304	Juvenile bud 2	0.904
	CRR073305	Juvenile bud 3	0.635
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.055
	CRR073308	Third green 3	0.326
	CRR073309	Second white 1	0.934
	CRR073310	Second white 2	0.404
	CRR073311	Second white 3	0.268
	CRR073312	Silver flowering 1	0.191
	CRR073313	Silver flowering 2	0.722
	CRR073314	Silver flowering 3	0.120
	CRR073315	Gold flowering 1	0.532
	CRR073316	Gold flowering 2	1.145
	CRR073317	Gold flowering 3	0.556
	CRR073318	Tawny withering 1	1.596
	CRR073319	Tawny withering 2	1.825
	CRR073320	Tawny withering 3	1.990