Detail information of GWHGAAZE024207


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010106863.1060S ribosomal protein L3 [Morus notabilis]
COGYP_004484822.12E-6950S ribosomal protein L3
Swissprottr|P35684|RL3_ORYSJ060S ribosomal protein L3
trEMBLtr|W9S5Y9|W9S5Y9_9ROSA060S ribosomal protein L3 {ECO:0000313|EMBL:EXC12323.1}
TAIR10AT1G43170.90ribosomal protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3750573637509110-
GWHAAZE00000007mRNA3750573637509110-
GWHAAZE00000007exon3750902637509110-
GWHAAZE00000007exon3750819437508304-
GWHAAZE00000007exon3750771937508023-
GWHAAZE00000007exon3750675837507167-
GWHAAZE00000007exon3750573637506241-
GWHAAZE00000007CDS3750902637509110-
GWHAAZE00000007CDS3750819437508304-
GWHAAZE00000007CDS3750771937508023-
GWHAAZE00000007CDS3750675837507167-
GWHAAZE00000007CDS3750598337506241-
GWHAAZE00000007three_prime_UTR3750573637505982-
Transcript Sequence

Network for GWHGAAZE024207

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.23Ribosomal_L313701.30E-194
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02925RP-L3e, RPL3 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf571.747
SRR3591706second leaf234.859
SRR3591707mature leaf127.108
SRR3591708Shoot apex730.707
SRR3591709Stem268.839
SRR3591710White floral bud208.412
SRR3591711White flower280.106
SRR3591712Green floral bud445.771
SRR3591713Yellow flower162.572
SRP173429 SRR8316895Juvenile bud stage 282.609
SRR8316896Juvenile bud stage 384.680
SRR8316897Juvenile bud stage 200.645
SRR8316894Third green stage 148.126
SRR8316900Third green stage 486.310
SRR8316901Third green stage 435.707
SRR8316898Complete white stage 76.271
SRR8316899Complete white stage 436.642
SRR8316903Complete white stage 111.896
SRR8316902Silver flowering stage60.365
SRR8316904Silver flowering stage65.315
SRR8316905Silver flowering stage29.176
SRR8316906Gold flowering stage 114.199
SRR8316907Gold flowering stage 103.128
SRR8316908Gold flowering stage 155.208
SRP132670SRR6706286Control355.895
SRR6706287Light intensity 50%364.015
SRR6706288Light intensity 20%401.829
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1373.071
CNS0095593Slightly white alabastrum(diploid) 2448.279
CNS0095594Slightly white alabastrum(diploid) 3351.454
CNS0095595Whole white alabastrum(diploid) 2325.480
CNS0095596Whole white alabastrum(diploid) 3368.838
CNS0095597Whole white alabastrum(diploid) 4237.527
CNS0095598Silvery flower (diploied) 1234.189
CNS0095599Silvery flower (diploied) 2232.640
CNS0095600Silvery flower (diploied) 3172.933
CNS0095601Golden flower (diploid) 1200.240
CNS0095602Golden flower (diploid) 2177.902
CNS0095603Golden flower (diploid) 3174.172
CNS0095604Slightly white alabastrum(tetraploid) 1382.146
CNS0095605Slightly white alabastrum(tetraploid) 2357.063
CNS0095606Slightly white alabastrum(tetraploid) 3579.337
CNS0095607Whole white alabastrum(tetraploid) 1185.501
CNS0095608Whole white alabastrum(tetraploid) 2155.501
CNS0095609Whole white alabastrum(tetraploid) 3424.691
CNS0095610Silvery flower (tetraploid) 1131.360
CNS0095611Silvery flower (tetraploid) 2140.769
CNS0095612Silvery flower (tetraploid) 390.566
CNS0095613Golden flower (tetraploid) 167.546
CNS0095614Golden flower (tetraploid) 2116.096
CNS0095615Golden flower (tetraploid) 360.486
CRA001975CRR073297Stem 1470.855
CRR073298Stem 2482.991
CRR073299Stem 3570.788
CRR073300Leaf 1478.063
CRR073301Leaf 2490.486
CRR073302Leaf 3624.705
CRR073303Juvenile bud 1519.151
CRR073304Juvenile bud 2383.686
CRR073305Juvenile bud 3450.586
CRR073306Third green 154.469
CRR073307Third green 252.389
CRR073308Third green 368.745
CRR073309Second white 165.563
CRR073310Second white 251.424
CRR073311Second white 338.146
CRR073312Silver flowering 169.036
CRR073313Silver flowering 286.870
CRR073314Silver flowering 382.270
CRR073315Gold flowering 1174.913
CRR073316Gold flowering 2221.279
CRR073317Gold flowering 3220.919
CRR073318Tawny withering 1502.181
CRR073319Tawny withering 2387.788
CRR073320Tawny withering 3515.598