Gene detail

Detail information of GWHGAAZE024192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260917.1	1.00684E-96	PREDICTED: transcription factor VIP1-like [Nelumbo nucifera]
Swissprot	tr\|Q9MA75\|VIP1_ARATH	9E-70	Transcription factor VIP1
trEMBL	tr\|F6GYV2\|F6GYV2_VITVI	8E-99	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45138.1}
TAIR10	AT1G43700.1	2E-47	VIRE2-interacting protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	37131073	37135744	-
GWHAAZE00000007	mRNA	37131073	37135744	-
GWHAAZE00000007	exon	37135158	37135744	-
GWHAAZE00000007	exon	37134177	37134309	-
GWHAAZE00000007	exon	37131073	37131177	-
GWHAAZE00000007	CDS	37135158	37135744	-
GWHAAZE00000007	CDS	37134177	37134309	-
GWHAAZE00000007	CDS	37131073	37131177	-

Transcript Sequence
>GWHTAAZE024226 ATGGACCCTAGGTTCGCCGGAAAATCCATTACGGCGACGTATCCAGGCCGGACCGACATAGACCAGATGCCAGATACCCCCAACCGCCGGGGGTCCCACCATCGACGGGCCCAATCAGAGACCTTCTTCCGCTTCCCCGACGACATCCTCCTAGACGACGCCGTTGCCGACTTCGACCTCTCCAGCCTCGACCTGCCTTCTCTCTCCGACACCCAGATGACCGTCGATTCGTCCAAGTCAGACTCATCCAACGGCGGTGGAGAGAATAATAATAACAACAACAAGGGGAACAATAATAAGGCTAGTAGGCCTGTGGGGCCCGCTTCTCACCTGAGGAGCTTGTCTGTGGATGCTGATTTTTTTGATGGGCTAGGGTTTACATCCGGCGCCGGAGACGGCGGAGGCGAGGGGGAGAGGTATGGTGGGGGAAAGCAGGTTGGGGGTCAAGGTGGTCATAGGCATAGTAACTCGATGGATGGGTCAACGACGTCGTTTGATGTAATGATGATGATGGATAATACCAAGAAAGCCCTAGGCCCTGATAGATTAGCTGAACTCTCTTTGATTGATCCCAAGCGAGCTAAAAGGATTCTTGCAAATAGACAATCTGCAGCTCGGTCGAAAGAGAGGAAAATACGTTACACCAATGAGCTAGAGAGGAAAGTCCAGACCCTTCAGACAGAAGCTACCACCCTATCTGCACAGGTTACATTGCTGCAGAGAGACACTACTGGTTTGACTACCGAGAACAAGGAACTCAAGCTGCGTTTACAAGCTATGGAACAACAGGCGCTTCTTAGAGATGGTATGCATTGTTTCACTTGA

Network for GWHGAAZE024192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	192	250	4.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K20557	VIP1	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.279
	SRR3591706	second leaf	14.600
	SRR3591707	mature leaf	33.220
	SRR3591708	Shoot apex	26.837
	SRR3591709	Stem	63.548
	SRR3591710	White floral bud	35.601
	SRR3591711	White flower	53.004
	SRR3591712	Green floral bud	31.043
	SRR3591713	Yellow flower	33.566
SRP173429	SRR8316895	Juvenile bud stage	14.810
	SRR8316896	Juvenile bud stage	21.089
	SRR8316897	Juvenile bud stage	7.778
	SRR8316894	Third green stage	8.555
	SRR8316900	Third green stage	19.897
	SRR8316901	Third green stage	20.852
	SRR8316898	Complete white stage	11.838
	SRR8316899	Complete white stage	46.141
	SRR8316903	Complete white stage	16.550
	SRR8316902	Silver flowering stage	15.722
	SRR8316904	Silver flowering stage	15.353
	SRR8316905	Silver flowering stage	8.735
	SRR8316906	Gold flowering stage	35.486
	SRR8316907	Gold flowering stage	38.664
	SRR8316908	Gold flowering stage	35.253
SRP132670	SRR6706286	Control	35.261
	SRR6706287	Light intensity 50%	38.040
	SRR6706288	Light intensity 20%	35.055
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.618
	CNS0095593	Slightly white alabastrum(diploid) 2	13.702
	CNS0095594	Slightly white alabastrum(diploid) 3	12.767
	CNS0095595	Whole white alabastrum(diploid) 2	10.598
	CNS0095596	Whole white alabastrum(diploid) 3	8.962
	CNS0095597	Whole white alabastrum(diploid) 4	8.843
	CNS0095598	Silvery flower (diploied) 1	25.527
	CNS0095599	Silvery flower (diploied) 2	13.727
	CNS0095600	Silvery flower (diploied) 3	20.384
	CNS0095601	Golden flower (diploid) 1	17.592
	CNS0095602	Golden flower (diploid) 2	25.997
	CNS0095603	Golden flower (diploid) 3	26.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.996
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.369
	CNS0095610	Silvery flower (tetraploid) 1	23.615
	CNS0095611	Silvery flower (tetraploid) 2	22.984
	CNS0095612	Silvery flower (tetraploid) 3	13.964
	CNS0095613	Golden flower (tetraploid) 1	14.163
	CNS0095614	Golden flower (tetraploid) 2	23.919
	CNS0095615	Golden flower (tetraploid) 3	22.414
CRA001975	CRR073297	Stem 1	24.957
	CRR073298	Stem 2	25.616
	CRR073299	Stem 3	29.829
	CRR073300	Leaf 1	24.773
	CRR073301	Leaf 2	24.583
	CRR073302	Leaf 3	18.931
	CRR073303	Juvenile bud 1	22.470
	CRR073304	Juvenile bud 2	21.544
	CRR073305	Juvenile bud 3	32.013
	CRR073306	Third green 1	15.711
	CRR073307	Third green 2	15.336
	CRR073308	Third green 3	24.017
	CRR073309	Second white 1	20.604
	CRR073310	Second white 2	21.480
	CRR073311	Second white 3	19.359
	CRR073312	Silver flowering 1	19.700
	CRR073313	Silver flowering 2	21.235
	CRR073314	Silver flowering 3	19.104
	CRR073315	Gold flowering 1	21.339
	CRR073316	Gold flowering 2	24.458
	CRR073317	Gold flowering 3	22.645
	CRR073318	Tawny withering 1	27.422
	CRR073319	Tawny withering 2	35.763
	CRR073320	Tawny withering 3	29.905