Detail information of GWHGAAZE024180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008785787.12.25199E-82PREDICTED: glycine-rich RNA-binding protein [Phoenix dactylifera]
COGYP_003157337.12E-22RNP-1 like RNA-binding protein
Swissprottr|Q9LIN3|RZ1A_ARATH1E-66Glycine-rich RNA-binding protein RZ1A {ECO:0000305}
trEMBLtr|A0A067KMU6|A0A067KMU6_JATCU2E-76Uncharacterized protein {ECO:0000313|EMBL:KDP37561.1}
TAIR10AT3G26420.13E-27RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3678269636783431+
GWHAAZE00000007mRNA3678269636783431+
GWHAAZE00000007exon3678269636782806+
GWHAAZE00000007exon3678292236783431+
GWHAAZE00000007CDS3678269636782806+
GWHAAZE00000007CDS3678292236783431+
Transcript Sequence

Network for GWHGAAZE024180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_110781.30E-21
PF00098.24zf-CCHC1301457.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12885RBMX, HNRNPG Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.878
SRR3591706second leaf42.061
SRR3591707mature leaf26.924
SRR3591708Shoot apex73.610
SRR3591709Stem53.974
SRR3591710White floral bud49.701
SRR3591711White flower64.560
SRR3591712Green floral bud65.674
SRR3591713Yellow flower51.948
SRP173429 SRR8316895Juvenile bud stage 48.699
SRR8316896Juvenile bud stage 70.594
SRR8316897Juvenile bud stage 34.510
SRR8316894Third green stage 29.105
SRR8316900Third green stage 75.163
SRR8316901Third green stage 81.611
SRR8316898Complete white stage 26.641
SRR8316899Complete white stage 91.847
SRR8316903Complete white stage 41.803
SRR8316902Silver flowering stage26.298
SRR8316904Silver flowering stage29.105
SRR8316905Silver flowering stage16.772
SRR8316906Gold flowering stage 59.897
SRR8316907Gold flowering stage 66.441
SRR8316908Gold flowering stage 73.776
SRP132670SRR6706286Control159.189
SRR6706287Light intensity 50%153.617
SRR6706288Light intensity 20%147.594
CNP0000432CNS0095592Slightly white alabastrum(diploid) 177.395
CNS0095593Slightly white alabastrum(diploid) 293.010
CNS0095594Slightly white alabastrum(diploid) 374.968
CNS0095595Whole white alabastrum(diploid) 264.459
CNS0095596Whole white alabastrum(diploid) 357.225
CNS0095597Whole white alabastrum(diploid) 448.161
CNS0095598Silvery flower (diploied) 175.747
CNS0095599Silvery flower (diploied) 265.245
CNS0095600Silvery flower (diploied) 350.229
CNS0095601Golden flower (diploid) 158.131
CNS0095602Golden flower (diploid) 250.087
CNS0095603Golden flower (diploid) 347.567
CNS0095604Slightly white alabastrum(tetraploid) 173.006
CNS0095605Slightly white alabastrum(tetraploid) 274.688
CNS0095606Slightly white alabastrum(tetraploid) 3129.649
CNS0095607Whole white alabastrum(tetraploid) 144.379
CNS0095608Whole white alabastrum(tetraploid) 235.470
CNS0095609Whole white alabastrum(tetraploid) 385.689
CNS0095610Silvery flower (tetraploid) 173.865
CNS0095611Silvery flower (tetraploid) 242.602
CNS0095612Silvery flower (tetraploid) 340.091
CNS0095613Golden flower (tetraploid) 157.827
CNS0095614Golden flower (tetraploid) 280.348
CNS0095615Golden flower (tetraploid) 330.124
CRA001975CRR073297Stem 157.179
CRR073298Stem 255.877
CRR073299Stem 367.156
CRR073300Leaf 161.720
CRR073301Leaf 260.969
CRR073302Leaf 363.429
CRR073303Juvenile bud 166.049
CRR073304Juvenile bud 241.625
CRR073305Juvenile bud 363.582
CRR073306Third green 121.766
CRR073307Third green 221.181
CRR073308Third green 320.925
CRR073309Second white 123.526
CRR073310Second white 223.775
CRR073311Second white 318.315
CRR073312Silver flowering 117.754
CRR073313Silver flowering 222.924
CRR073314Silver flowering 316.022
CRR073315Gold flowering 116.913
CRR073316Gold flowering 221.880
CRR073317Gold flowering 321.570
CRR073318Tawny withering 155.115
CRR073319Tawny withering 242.324
CRR073320Tawny withering 352.513