Detail information of GWHGAAZE024150


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010104285.10hypothetical protein L484_005388 [Morus notabilis]
Swissprottr|Q9SDQ3|SCL1_ARATH0Scarecrow-like protein 1
trEMBLtr|W9RNG0|W9RNG0_9ROSA0Uncharacterized protein {ECO:0000313|EMBL:EXB99570.1}
TAIR10AT1G21450.14E-173SCARECROW-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3625298036254332+
GWHAAZE00000007mRNA3625298036254332+
GWHAAZE00000007exon3625298036253036+
GWHAAZE00000007exon3625307336254332+
GWHAAZE00000007CDS3625298036253036+
GWHAAZE00000007CDS3625307336254332+
Transcript Sequence

Network for GWHGAAZE024150

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS704383.60E-134
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.958
SRR3591706second leaf14.543
SRR3591707mature leaf31.649
SRR3591708Shoot apex31.948
SRR3591709Stem77.410
SRR3591710White floral bud41.814
SRR3591711White flower83.268
SRR3591712Green floral bud33.460
SRR3591713Yellow flower93.918
SRP173429 SRR8316895Juvenile bud stage 25.871
SRR8316896Juvenile bud stage 34.336
SRR8316897Juvenile bud stage 17.227
SRR8316894Third green stage 10.962
SRR8316900Third green stage 30.246
SRR8316901Third green stage 29.105
SRR8316898Complete white stage 13.514
SRR8316899Complete white stage 47.154
SRR8316903Complete white stage 25.785
SRR8316902Silver flowering stage15.793
SRR8316904Silver flowering stage22.228
SRR8316905Silver flowering stage9.441
SRR8316906Gold flowering stage 44.542
SRR8316907Gold flowering stage 47.989
SRR8316908Gold flowering stage 44.578
SRP132670SRR6706286Control40.065
SRR6706287Light intensity 50%39.516
SRR6706288Light intensity 20%39.884
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.288
CNS0095593Slightly white alabastrum(diploid) 236.488
CNS0095594Slightly white alabastrum(diploid) 333.310
CNS0095595Whole white alabastrum(diploid) 230.696
CNS0095596Whole white alabastrum(diploid) 321.359
CNS0095597Whole white alabastrum(diploid) 428.797
CNS0095598Silvery flower (diploied) 162.965
CNS0095599Silvery flower (diploied) 250.168
CNS0095600Silvery flower (diploied) 372.546
CNS0095601Golden flower (diploid) 166.564
CNS0095602Golden flower (diploid) 298.313
CNS0095603Golden flower (diploid) 395.316
CNS0095604Slightly white alabastrum(tetraploid) 127.213
CNS0095605Slightly white alabastrum(tetraploid) 223.928
CNS0095606Slightly white alabastrum(tetraploid) 345.618
CNS0095607Whole white alabastrum(tetraploid) 120.485
CNS0095608Whole white alabastrum(tetraploid) 219.369
CNS0095609Whole white alabastrum(tetraploid) 332.504
CNS0095610Silvery flower (tetraploid) 177.819
CNS0095611Silvery flower (tetraploid) 262.931
CNS0095612Silvery flower (tetraploid) 353.678
CNS0095613Golden flower (tetraploid) 179.871
CNS0095614Golden flower (tetraploid) 282.931
CNS0095615Golden flower (tetraploid) 3101.770
CRA001975CRR073297Stem 142.041
CRR073298Stem 234.872
CRR073299Stem 325.824
CRR073300Leaf 142.513
CRR073301Leaf 242.619
CRR073302Leaf 320.498
CRR073303Juvenile bud 126.835
CRR073304Juvenile bud 220.003
CRR073305Juvenile bud 331.212
CRR073306Third green 115.285
CRR073307Third green 212.940
CRR073308Third green 314.143
CRR073309Second white 119.651
CRR073310Second white 223.132
CRR073311Second white 317.887
CRR073312Silver flowering 135.833
CRR073313Silver flowering 230.189
CRR073314Silver flowering 333.155
CRR073315Gold flowering 129.704
CRR073316Gold flowering 241.979
CRR073317Gold flowering 329.909
CRR073318Tawny withering 170.027
CRR073319Tawny withering 272.892
CRR073320Tawny withering 364.659