Gene detail

Detail information of GWHGAAZE024132

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007019289.1	0	F-box/RNI-like superfamily protein isoform 1 [Theobroma cacao]
COG	YP_008914.1	0.000000003	hypothetical protein pc1915
Swissprot	tr\|Q9LPL4\|SKP2A_ARATH	8E-163	F-box protein SKP2A
trEMBL	tr\|A0A061FPQ7\|A0A061FPQ7_THECC	0	F-box/RNI-like superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY16514.1}
TAIR10	AT1G21410.1	4E-121	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35745451	35749106	+
GWHAAZE00000007	mRNA	35745451	35749106	+
GWHAAZE00000007	exon	35745451	35745781	+
GWHAAZE00000007	exon	35747024	35747372	+
GWHAAZE00000007	exon	35747654	35747795	+
GWHAAZE00000007	exon	35748805	35749106	+
GWHAAZE00000007	five_prime_UTR	35745451	35745521	+
GWHAAZE00000007	CDS	35745522	35745781	+
GWHAAZE00000007	CDS	35747024	35747372	+
GWHAAZE00000007	CDS	35747654	35747795	+
GWHAAZE00000007	CDS	35748805	35749106	+

Transcript Sequence
>GWHTAAZE024166 ACAAGGAGTTTTCTTCGGATATAAAGTTGAGGATTGTGTATATTTAATTATAATAGAGAGGCAAAATTGAAATGATTGGAGCAGAGGGTCTGAAGACTGATGATCTAGATTTATGCTTTGAGAAATTGATGACGGTGTTTGGTGGAGAAGGAATTGGTGGTGGGAAGATGGGAGGCGGTAGAGTGATCACTGAATGGAAAGACATTCCTATGGAGCTTTTGTTGCGAATTGTATCGCTTGTTGATGATCAAACGGTAATCGTTGCTTCCGGTGTTTGTAGTGGGTGGAGAGATGCTATTTGCTGGGGTCTTACTCATCTTTCCCTTTCTTGGTGTAAGAACAACATGAACAACTTGGTGCTATCTCTTGCTCCAAAATTCACCAAACTGCAGGTTCTAGTTCTCCGCCAAGATAAACCGCAGCTTCAGGATAATGCTGTTGAAACTATCGCAAATTGTTGCCATGACCTGCTGGATTTGGATCTCAGCAAGAGCTTCAAACTCAGTGACCGTTCCTTATATGCCTTGGCACATGGCTGTCCAAATCTTACTAAGCTTAACATCAGTGGCTGCTCTGCCTTCAGTGATACTGCTCTTGCCTATCTCACTAGTTTCTGCAGGAAATTAAAAATCTTAAATCTTTGTGGTTGTGTTAAAGCTGCTTCTGATGAGGCATTGAAGGCAATTGGATATAACTGCAATCAGTTGCAGTCTTTGAATCTGGGATGGTGTGAGAAGGTTGGTGACATAGGGGTAATGAGTTTAGCATATGGATGCCCTGATTTACGAGCCCTTGACTTGTGTGGCTGTCTTCTTATTACAGATGAGAGTGTAATTGCATTGGCAAACAATTGCCTCCATCTGAGATCCCTTGGACTCTACTACTGCCAGAATATAACAGACAGAGCAATGTACTCTCTGGCTCATAGCCGAGTGAAGAACAAGCAAGAGATGTGGGAATCTGTGAAGAACAGGTACAAGGAGGAGGAAGGTCTTATGAATCTCAACATCAGCCAGTGCACTGCTCTCACTCCCCAGCTGTTCAAGCACTATGCGACTCCTTCCCGGCACTCCACACGTGCCCGGGTAGGCACTCTCTCATCATTAGCGGCTGCCTCAACTTGA

Network for GWHGAAZE024132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	42	77	1.30E-05
PF13516.7	LRR_6	156	173	0.99
PF13516.7	LRR_6	209	232	0.0032
PF13516.7	LRR_6	235	258	0.31
PF13516.7	LRR_6	261	284	1.3

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K03875	SKP2, FBXL1	Ubiquitin mediated proteolysis	map04120
		FoxO signaling pathway	map04068
		mTOR signaling pathway	map04150
		Cell cycle	map04110

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.109
	SRR3591706	second leaf	17.127
	SRR3591707	mature leaf	33.230
	SRR3591708	Shoot apex	22.138
	SRR3591709	Stem	70.152
	SRR3591710	White floral bud	69.226
	SRR3591711	White flower	89.051
	SRR3591712	Green floral bud	27.934
	SRR3591713	Yellow flower	90.765
SRP173429	SRR8316895	Juvenile bud stage	50.744
	SRR8316896	Juvenile bud stage	75.344
	SRR8316897	Juvenile bud stage	24.029
	SRR8316894	Third green stage	20.951
	SRR8316900	Third green stage	35.923
	SRR8316901	Third green stage	40.319
	SRR8316898	Complete white stage	25.389
	SRR8316899	Complete white stage	73.148
	SRR8316903	Complete white stage	39.709
	SRR8316902	Silver flowering stage	39.275
	SRR8316904	Silver flowering stage	60.003
	SRR8316905	Silver flowering stage	31.288
	SRR8316906	Gold flowering stage	101.934
	SRR8316907	Gold flowering stage	152.306
	SRR8316908	Gold flowering stage	92.323
SRP132670	SRR6706286	Control	41.620
	SRR6706287	Light intensity 50%	44.276
	SRR6706288	Light intensity 20%	36.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.224
	CNS0095593	Slightly white alabastrum(diploid) 2	29.016
	CNS0095594	Slightly white alabastrum(diploid) 3	34.103
	CNS0095595	Whole white alabastrum(diploid) 2	22.908
	CNS0095596	Whole white alabastrum(diploid) 3	18.925
	CNS0095597	Whole white alabastrum(diploid) 4	22.890
	CNS0095598	Silvery flower (diploied) 1	89.370
	CNS0095599	Silvery flower (diploied) 2	98.017
	CNS0095600	Silvery flower (diploied) 3	128.332
	CNS0095601	Golden flower (diploid) 1	112.458
	CNS0095602	Golden flower (diploid) 2	149.699
	CNS0095603	Golden flower (diploid) 3	148.209
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.398
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.943
	CNS0095610	Silvery flower (tetraploid) 1	166.457
	CNS0095611	Silvery flower (tetraploid) 2	166.593
	CNS0095612	Silvery flower (tetraploid) 3	43.514
	CNS0095613	Golden flower (tetraploid) 1	165.907
	CNS0095614	Golden flower (tetraploid) 2	140.792
	CNS0095615	Golden flower (tetraploid) 3	181.210
CRA001975	CRR073297	Stem 1	40.287
	CRR073298	Stem 2	38.671
	CRR073299	Stem 3	41.892
	CRR073300	Leaf 1	26.339
	CRR073301	Leaf 2	27.064
	CRR073302	Leaf 3	25.511
	CRR073303	Juvenile bud 1	35.782
	CRR073304	Juvenile bud 2	26.806
	CRR073305	Juvenile bud 3	46.194
	CRR073306	Third green 1	42.815
	CRR073307	Third green 2	53.973
	CRR073308	Third green 3	47.180
	CRR073309	Second white 1	37.295
	CRR073310	Second white 2	39.008
	CRR073311	Second white 3	33.127
	CRR073312	Silver flowering 1	44.637
	CRR073313	Silver flowering 2	57.426
	CRR073314	Silver flowering 3	56.686
	CRR073315	Gold flowering 1	12.319
	CRR073316	Gold flowering 2	9.974
	CRR073317	Gold flowering 3	9.922
	CRR073318	Tawny withering 1	28.275
	CRR073319	Tawny withering 2	24.276
	CRR073320	Tawny withering 3	29.892