Gene detail

Detail information of GWHGAAZE024120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32870.1	0	hypothetical protein JCGZ_12162 [Jatropha curcas]
COG	YP_003549096.1	2E-151	UDP-sugar pyrophosphorylase
Swissprot	tr\|Q0GZS3\|USP_CUCME	0	UDP-sugar pyrophosphorylase
trEMBL	tr\|A0A067KKS0\|A0A067KKS0_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32870.1}
TAIR10	AT5G52560.1	0	UDP-sugar pyrophosphorylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35177868	35188071	+
GWHAAZE00000007	mRNA	35177868	35188071	+
GWHAAZE00000007	exon	35177868	35177981	+
GWHAAZE00000007	exon	35179118	35179222	+
GWHAAZE00000007	exon	35179799	35179915	+
GWHAAZE00000007	exon	35180730	35180870	+
GWHAAZE00000007	exon	35181283	35181382	+
GWHAAZE00000007	exon	35181983	35182110	+
GWHAAZE00000007	exon	35182198	35182269	+
GWHAAZE00000007	exon	35182380	35182444	+
GWHAAZE00000007	exon	35183178	35183238	+
GWHAAZE00000007	exon	35183338	35183455	+
GWHAAZE00000007	exon	35184274	35184398	+
GWHAAZE00000007	exon	35185158	35185234	+
GWHAAZE00000007	exon	35185500	35185605	+
GWHAAZE00000007	exon	35185724	35185783	+
GWHAAZE00000007	exon	35186018	35186098	+
GWHAAZE00000007	exon	35186963	35187202	+
GWHAAZE00000007	exon	35187641	35188071	+
GWHAAZE00000007	CDS	35177868	35177981	+
GWHAAZE00000007	CDS	35179118	35179222	+
GWHAAZE00000007	CDS	35179799	35179915	+
GWHAAZE00000007	CDS	35180730	35180870	+
GWHAAZE00000007	CDS	35181283	35181382	+
GWHAAZE00000007	CDS	35181983	35182110	+
GWHAAZE00000007	CDS	35182198	35182269	+
GWHAAZE00000007	CDS	35182380	35182444	+
GWHAAZE00000007	CDS	35183178	35183238	+
GWHAAZE00000007	CDS	35183338	35183455	+
GWHAAZE00000007	CDS	35184274	35184398	+
GWHAAZE00000007	CDS	35185158	35185234	+
GWHAAZE00000007	CDS	35185500	35185605	+
GWHAAZE00000007	CDS	35185724	35185783	+
GWHAAZE00000007	CDS	35186018	35186098	+
GWHAAZE00000007	CDS	35186963	35187202	+
GWHAAZE00000007	CDS	35187641	35187808	+
GWHAAZE00000007	three_prime_UTR	35187809	35188071	+

Transcript Sequence
>GWHTAAZE024154 ATGACTACAGTGGTAGGATCAACCGCCGATAAAATCTCCAATCTCAACATCAATGTCGATTTTTCCTCTTCTCCAAATCTCCACAAGAACTTGTCTGTCCTCTCTCCCCAACAGATCGAACTAGCGAAGATGTTGTTGGAGATGGGGCAGAGTCATCTCTTTGAGAATTGGGCTGAGCCGGGGATTGATGATGGTGAGAAGAGAGGGTTCTTTGATCAGGTGGCTCGGCTTAATGAGAGTTATCCAGGGGGTCTGGCTTCATATATTAAAACTGCTAGAGAACTCTTAGCAGAATCAAAGGCCGGGAAGAACCCATTTGATGGTTTTACACCATCTGTCCCCTCAGGAGAGATTCTAACTTTTGGTGATGATAGCTTCATAATATTTGAGGAAACTGGTGTCAGACAAGTGCAGAATGCTGCATTCGTTCTTGTTGCTGGGGGACTTGGGGAACGTCTTGGATACAATGGAATAAAGGTCGCTCTTCCTATAGAATCTACTACCGAAACTTGTTTCTTACAGCACTACATTGAGTCTATCTTGGCTTTACAAGATGCTAGCTGTAGAATAGTGCAAGGCAATTGCCAACGAGAGATACCTTTGGTTATAATGACCTCAGATGACACACATTCACCTACTTTAAAGCTTTTAGAATCAAATGCTTATTTTGGAATGAAACCTACACAAGTAAAACTTTTGAAGCAGGAAAAAGTTGCTTGCTTAGATGATAATGATGCCAGGCTTGCTGTGGACCCTCATAATAAATACAGAATTCAGACTAAACCTCATGGGCATGGTGATGTTCATTCACTCCTTTATTCAAGTGGTCTTCTTAATGCATGGCATGATGCTGGTTTGAGATGGGTTGTGTTTTTCCAAGATACAAATGGACTTCTCTTCAAGGCAATTCCAGCAGCATTGGGAGTTAGTGCCACCAAACAATACCATGTTAATTCTCTTGCTGTGCCCCGCAAAGCGAAGGAAGCCATTGGAGGCATTACCAAGCTCACTCATGCAGATGGAAGGACAATGGTGATTAATGTGGAATACAATCAGCTTGATCCTCTCCTTAGAGCAACTGGAAACCCTGATGGGGATGTTAACTGTGAAACTGGCTATTCTCCTTTTCCTGGAAATATAAACCAATTAATTCTTGAACTTGATCCTTACATTGAGGAGCTCACAAAAACCAGAGGTGCTATAAAGGAGTTTGTTAACCCAAAATACAAAGATTCAACTAAAACTTCATTCAAGTCCTCTACTCGACTCGAGTGCATGATGCAAGATTATCCTAAAACTTTGCCTCCGTCAGCAAGGGTTGGATTTACCGTGATGGATACGTGGCTTGCTTATGCACCCGTGAAAAACAACCCTGAAGATGCTGCTAAGGTACCCAAGGGAAATCCATATCACAGTGCTACTTCCGGAGAAATGGCTATTTATCGGGCAAACAGCCTCATCCTAAGAAAGGCCGGAGTAGAGGTAGAAGAGCCAGTAAACCAGGTGTTCAATGGGCAGGAGGTGGAAGTATGGTCACGTGTCACATGGAAGCCAAAATGGGCAATCACATTTGCCGAGGTTAAAAGCAAAGTGAGTGGAAGTTGCTCCGTTTCTCAGAAATCAACAATGGTCATCAAGGGCCGTAATGTCTTTCTCGAGAATCTCTCCTTGGACGGAGCTCTTGTTATTGACTCTATTGATAATGCAGAGGTAAAAGTGGGAGGTTCGGTGAAAAACAAGGGTTGGGTCATCGAAAACGTAGATTACAAAGACACCTCGGTGCCTGAGAAGGTGAGGATTAGGGGATTTAGAGTAAACAAGGTTGAGCAGTTAGAGAAAACCTACACCGAACCCGGTAAATTCTCATTGCAGCTCTAAGGTTCATCTTTACGAAAGAGGTCATCTGTTATAGATTTTCTTCCAGTTTGTGTTGATATATTTCGATTATTTTCTTTTCTCTGTCTAGTAATTACATAATGTCACGGGTCATGTAGATGAGTAGAGTGTCATTTGGTTCATGTAGATGATCGAGTAGAATTAGAAGTTACAGTATATATTTTGTTAAGTTAATATGTGGGGAATATCTTTTATGATAAATTTGGTAAGCTTAAATTTATGATGATTGTCTAGTGTTAGCTCAA

Network for GWHGAAZE024120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01704.19	UDPGP	134	289	2.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12447	USP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Pentose and glucuronate interconversions	map00040
		Galactose metabolism	map00052
		Ascorbate and aldarate metabolism	map00053
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0070569	molecular_function	uridylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.782
	SRR3591706	second leaf	6.436
	SRR3591707	mature leaf	11.580
	SRR3591708	Shoot apex	8.460
	SRR3591709	Stem	4.993
	SRR3591710	White floral bud	15.771
	SRR3591711	White flower	9.441
	SRR3591712	Green floral bud	11.713
	SRR3591713	Yellow flower	8.617
SRP173429	SRR8316895	Juvenile bud stage	8.750
	SRR8316896	Juvenile bud stage	15.406
	SRR8316897	Juvenile bud stage	7.656
	SRR8316894	Third green stage	5.700
	SRR8316900	Third green stage	15.238
	SRR8316901	Third green stage	13.813
	SRR8316898	Complete white stage	9.173
	SRR8316899	Complete white stage	12.348
	SRR8316903	Complete white stage	17.102
	SRR8316902	Silver flowering stage	11.342
	SRR8316904	Silver flowering stage	17.220
	SRR8316905	Silver flowering stage	7.851
	SRR8316906	Gold flowering stage	26.525
	SRR8316907	Gold flowering stage	24.023
	SRR8316908	Gold flowering stage	23.367
SRP132670	SRR6706286	Control	8.352
	SRR6706287	Light intensity 50%	9.201
	SRR6706288	Light intensity 20%	8.602
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.249
	CNS0095593	Slightly white alabastrum(diploid) 2	8.817
	CNS0095594	Slightly white alabastrum(diploid) 3	14.108
	CNS0095595	Whole white alabastrum(diploid) 2	10.811
	CNS0095596	Whole white alabastrum(diploid) 3	10.930
	CNS0095597	Whole white alabastrum(diploid) 4	10.151
	CNS0095598	Silvery flower (diploied) 1	14.368
	CNS0095599	Silvery flower (diploied) 2	13.878
	CNS0095600	Silvery flower (diploied) 3	24.460
	CNS0095601	Golden flower (diploid) 1	13.655
	CNS0095602	Golden flower (diploid) 2	26.000
	CNS0095603	Golden flower (diploid) 3	23.098
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.177
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.086
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.975
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.710
	CNS0095610	Silvery flower (tetraploid) 1	30.904
	CNS0095611	Silvery flower (tetraploid) 2	29.296
	CNS0095612	Silvery flower (tetraploid) 3	22.289
	CNS0095613	Golden flower (tetraploid) 1	24.726
	CNS0095614	Golden flower (tetraploid) 2	27.397
	CNS0095615	Golden flower (tetraploid) 3	32.975
CRA001975	CRR073297	Stem 1	15.179
	CRR073298	Stem 2	10.659
	CRR073299	Stem 3	11.822
	CRR073300	Leaf 1	11.424
	CRR073301	Leaf 2	9.998
	CRR073302	Leaf 3	7.176
	CRR073303	Juvenile bud 1	7.958
	CRR073304	Juvenile bud 2	10.470
	CRR073305	Juvenile bud 3	8.868
	CRR073306	Third green 1	10.773
	CRR073307	Third green 2	7.213
	CRR073308	Third green 3	8.449
	CRR073309	Second white 1	8.543
	CRR073310	Second white 2	14.521
	CRR073311	Second white 3	13.949
	CRR073312	Silver flowering 1	14.282
	CRR073313	Silver flowering 2	13.275
	CRR073314	Silver flowering 3	15.675
	CRR073315	Gold flowering 1	15.849
	CRR073316	Gold flowering 2	28.093
	CRR073317	Gold flowering 3	16.198
	CRR073318	Tawny withering 1	10.313
	CRR073319	Tawny withering 2	7.392
	CRR073320	Tawny withering 3	9.882