Gene detail

Detail information of GWHGAAZE024117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011102142.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Sesamum indicum]
COG	YP_004463009.1	3E-25	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q9LV48\|PERK1_ARATH	5E-79	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|A0A068UTQ8\|A0A068UTQ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_61 {ECO:0000313\|EMBL:CDP11935.1}
TAIR10	AT1G77280.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	35141250	35146401	+
GWHAAZE00000007	mRNA	35141250	35146401	+
GWHAAZE00000007	exon	35141250	35141439	+
GWHAAZE00000007	exon	35141898	35141995	+
GWHAAZE00000007	exon	35142408	35142663	+
GWHAAZE00000007	exon	35142736	35143461	+
GWHAAZE00000007	exon	35143753	35144001	+
GWHAAZE00000007	exon	35144545	35144708	+
GWHAAZE00000007	exon	35144787	35144866	+
GWHAAZE00000007	exon	35145107	35145254	+
GWHAAZE00000007	exon	35145346	35145495	+
GWHAAZE00000007	exon	35146126	35146401	+
GWHAAZE00000007	CDS	35141250	35141439	+
GWHAAZE00000007	CDS	35141898	35141995	+
GWHAAZE00000007	CDS	35142408	35142663	+
GWHAAZE00000007	CDS	35142736	35143461	+
GWHAAZE00000007	CDS	35143753	35144001	+
GWHAAZE00000007	CDS	35144545	35144708	+
GWHAAZE00000007	CDS	35144787	35144866	+
GWHAAZE00000007	CDS	35145107	35145254	+
GWHAAZE00000007	CDS	35145346	35145495	+
GWHAAZE00000007	CDS	35146126	35146401	+

Transcript Sequence
>GWHTAAZE024151 GAATTGACATTCCAGCAAGAAATGACTGAAACAGAGCTCGCCGGAGAAAACAGAGTCTCCGGTGGTTCCCGGACGGTGGTTGTCGGAGTGAAATTGGGGCCACACAGCAGAGAGCTGCTGACTTGGGCTCTGGTTAAAGTTGCTGAGCCTGGTGATAGAGTGATCGCTCTTCACGTTCTAAGCAACAATGAAATTGTGGATCGAGATGGGAAATCTTCTCTGCTTTCTCTGGTGAAGGATTTTGATTCTGTTCTTGCTGTTTATGAAGGTTTCTGCAACTTGAAACAGGTAGATCTCAAACTCAAGATCTGCAGAGGTTCATCAATCCGAAAGATTATAGTAAGAGAAGCGAAATCTTATGGTGCTACCGAGGTTATTGTGGGAACTGCTCGAAATCATCACACAATTCGATCATCAGCCTCGGTTGCAAAGTACTGCGCGAAGAAACTACAAAAGGATTGTAAAATAATCGCTGTTAATAATGGGAAAATTGTGTTTCATAGGGAACCATCTTCATCATCCAAGCCTAATCTCAATGCAAAAGGAAGTGAAGATCATCGAAGAAATGGTTTACTTAATGTGATTCAAAGGTCATTGAGTAAGAATTCAAAAGTACTAAATGATAGCAATGTAAACAATTGTGAGAATTTGATGTTGGCTTTAGTAAAAGCTAACTCTGAATGCGCAAATAGTGATAAGAAAAGAAGCTGTTCGATTTGCTCAGCGGAGTCTCTATCGCCAGAAAATAACTCTGCTGGACCGGAGGATTCCTCTGGTGATGGCGAGGAAGATAACTCAATGGCCATAGTGCCTTTAGAGGCCTCATCTAGTTCGATCTCTTTGTTGATAAGAGAATTGCCTGAACTTAGACCGGGTTGGCCCCTTCTTCGCCGTGCTATTTCATCAAAGCGGCTTGGTCTAGAGGCCTCTTCGGTGCAAAAAATCTCTGTCGTTCAGTGGGCAGTGCGGATCCCTAGACGAAGTTGTTTGCAAATTACGAATTTGGATGAAAAAAGGCATAGTTGCGAGTGTGATGAAGGTGAAAAAAACGTTAGTTATGAGTGTGATGAAGGGCAATCTGGTGAACTAAATGGAGAAAATGGCGCAATTGTTCTTGTCGGTAATGAAAATGCGTCTACTCCATCTTCTCCAAATCGTAGTTCGTGTAGTTTACCAATAGAATTGGTGAATCTTCACGAGAAATACGTGGCGACTTGCAGGTTGTTCAAATACAAGGAGCTTCTCTCAGCAACATCAAATTTCAGGCCTGAGAATATGATTGGAAAAGGAGGCAGCAGTCAAGTTTACAGAGGCTGTTTGCCTGACAGCAAGGAAGTTGCTGTTAAAATCTTGAAGCCATCTGAAGACGCATTGAAGGAGTTTGTTCTCGAAATCGAGATTATTACAACTTTACATCACAAAAACGTCATTTCACTCTTCGGGTTTTGTTTTGAAGACAACAATCTCCTCTTGGTTTACGATTTCCTATCTAGAGGAAGCCTCGAAGAGAACCTTCATGGTAATAAGAAGGATGAGCTCACGTTTGGGTGGAGTGAGAGGTATAAGGTGGCTGTGGGCGTGGCTGAGGCACTTGATTATCTACACAATACAACTGCTCAACCCGTTATCCACAGGGATGTTAAATCATCGAACATACTACTCTCTGATGATTTTGAGCCACAGCTCTCTGATTTTGGACTTGCAAAATGGGCTTCAACAACCTCATCACATATAACTTGCACCGATGTTGCTGGAACATTCGGCTATTTAGCTCCTGAATATTTCATGTATGGAAAAGTGAATAACAAGATCGATGTGTACGCATTTGGGGTTGTACTACTTGAGCTTCTTTCAGGGAGAAAGCCTATATGTAATGAATATCCAAAAGGCCAGGAGAGCCTTGTTATGTGGGCAAAGCCGATTCTAAATAGCGGAAAGTTTGCTCAACTATTGGACGCAAGCTTAGGGAGCAATTATCATCAAGAAGAGATGGAAAGGATGGTTTTAGCTGCAACTCTTTGTATTAGACGTTCACCACGAGCTCGGCCCCAAATTGGCCTTGTATTAAAGATCCTCAAAGGTGATGTTGAGATGATCAAGTGGGCAAGGCTAGAAGTGAATGCGCCTGTAGGGTCTTACGCAAAGCTTGAACTTAATCCATTGGAAGGCTCGGATGCATTGGAAGACGAAGGCTTCTCACAATCAAACCTCCAGTCCCATCTAAACCTTGCGTTGCTTGACGTGGACGCTTCTCTTTCAATGAGTAGCATTGAGCAAAGTGTCTCATTTGAGGACTACTTGAAAGGCCGGTGGAGCCGTTCGTCAAGCTTCGATTAA

Network for GWHGAAZE024117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	24	154	8.00E-09
PF00069.26	Pkinase	424	631	1.70E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.888
	SRR3591706	second leaf	25.211
	SRR3591707	mature leaf	27.966
	SRR3591708	Shoot apex	45.485
	SRR3591709	Stem	53.847
	SRR3591710	White floral bud	43.954
	SRR3591711	White flower	64.824
	SRR3591712	Green floral bud	25.809
	SRR3591713	Yellow flower	49.537
SRP173429	SRR8316895	Juvenile bud stage	10.713
	SRR8316896	Juvenile bud stage	12.795
	SRR8316897	Juvenile bud stage	2.930
	SRR8316894	Third green stage	8.903
	SRR8316900	Third green stage	20.093
	SRR8316901	Third green stage	15.251
	SRR8316898	Complete white stage	36.865
	SRR8316899	Complete white stage	29.968
	SRR8316903	Complete white stage	44.291
	SRR8316902	Silver flowering stage	48.961
	SRR8316904	Silver flowering stage	99.531
	SRR8316905	Silver flowering stage	43.976
	SRR8316906	Gold flowering stage	118.866
	SRR8316907	Gold flowering stage	101.630
	SRR8316908	Gold flowering stage	113.688
SRP132670	SRR6706286	Control	14.152
	SRR6706287	Light intensity 50%	15.939
	SRR6706288	Light intensity 20%	16.768
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.156
	CNS0095593	Slightly white alabastrum(diploid) 2	7.566
	CNS0095594	Slightly white alabastrum(diploid) 3	7.984
	CNS0095595	Whole white alabastrum(diploid) 2	7.424
	CNS0095596	Whole white alabastrum(diploid) 3	5.581
	CNS0095597	Whole white alabastrum(diploid) 4	7.623
	CNS0095598	Silvery flower (diploied) 1	13.648
	CNS0095599	Silvery flower (diploied) 2	14.228
	CNS0095600	Silvery flower (diploied) 3	71.116
	CNS0095601	Golden flower (diploid) 1	13.201
	CNS0095602	Golden flower (diploid) 2	44.141
	CNS0095603	Golden flower (diploid) 3	44.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.112
	CNS0095610	Silvery flower (tetraploid) 1	38.266
	CNS0095611	Silvery flower (tetraploid) 2	53.946
	CNS0095612	Silvery flower (tetraploid) 3	149.719
	CNS0095613	Golden flower (tetraploid) 1	45.685
	CNS0095614	Golden flower (tetraploid) 2	44.381
	CNS0095615	Golden flower (tetraploid) 3	104.174
CRA001975	CRR073297	Stem 1	35.804
	CRR073298	Stem 2	30.813
	CRR073299	Stem 3	36.698
	CRR073300	Leaf 1	32.173
	CRR073301	Leaf 2	24.179
	CRR073302	Leaf 3	28.826
	CRR073303	Juvenile bud 1	28.494
	CRR073304	Juvenile bud 2	20.734
	CRR073305	Juvenile bud 3	23.539
	CRR073306	Third green 1	247.694
	CRR073307	Third green 2	114.867
	CRR073308	Third green 3	171.076
	CRR073309	Second white 1	318.427
	CRR073310	Second white 2	360.915
	CRR073311	Second white 3	294.942
	CRR073312	Silver flowering 1	179.374
	CRR073313	Silver flowering 2	243.888
	CRR073314	Silver flowering 3	253.978
	CRR073315	Gold flowering 1	6.731
	CRR073316	Gold flowering 2	7.497
	CRR073317	Gold flowering 3	5.924
	CRR073318	Tawny withering 1	30.874
	CRR073319	Tawny withering 2	26.173
	CRR073320	Tawny withering 3	29.075