Detail information of GWHGAAZE024113


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010256838.13.3239E-180PREDICTED: uncharacterized protein LOC104596944 isoform X2 [Nelumbo nucifera]
trEMBLtr|D7TQ37|D7TQ37_VITVI3E-166Putative uncharacterized protein {ECO:0000313|EMBL:CBI32844.3}
TAIR10AT2G41020.11E-92WW domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene3503887535052557-
GWHAAZE00000007mRNA3503887535052557-
GWHAAZE00000007exon3505191235052557-
GWHAAZE00000007exon3505135035051435-
GWHAAZE00000007exon3505122435051258-
GWHAAZE00000007exon3505105235051130-
GWHAAZE00000007exon3505057735050655-
GWHAAZE00000007exon3504935635049439-
GWHAAZE00000007exon3504913335049275-
GWHAAZE00000007exon3504830735048359-
GWHAAZE00000007exon3504802935048085-
GWHAAZE00000007exon3504672035046886-
GWHAAZE00000007exon3504466835044866-
GWHAAZE00000007exon3504326535043378-
GWHAAZE00000007exon3504078735040912-
GWHAAZE00000007exon3504065435040705-
GWHAAZE00000007exon3503949535039676-
GWHAAZE00000007exon3503887535039237-
GWHAAZE00000007CDS3505191235052557-
GWHAAZE00000007CDS3505135035051435-
GWHAAZE00000007CDS3505122435051258-
GWHAAZE00000007CDS3505105235051130-
GWHAAZE00000007CDS3505057735050655-
GWHAAZE00000007CDS3504935635049439-
GWHAAZE00000007CDS3504913335049275-
GWHAAZE00000007CDS3504830735048359-
GWHAAZE00000007CDS3504802935048085-
GWHAAZE00000007CDS3504672035046886-
GWHAAZE00000007CDS3504466835044866-
GWHAAZE00000007CDS3504326535043378-
GWHAAZE00000007CDS3504078735040912-
GWHAAZE00000007CDS3504065435040705-
GWHAAZE00000007CDS3503952435039676-
GWHAAZE00000007three_prime_UTR3503949535039523-
GWHAAZE00000007three_prime_UTR3503887535039237-
Transcript Sequence

Network for GWHGAAZE024113

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00397.27WW4644942.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12865PQBP1, NPW38 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.623
SRR3591706second leaf11.438
SRR3591707mature leaf11.965
SRR3591708Shoot apex13.344
SRR3591709Stem16.405
SRR3591710White floral bud14.766
SRR3591711White flower17.892
SRR3591712Green floral bud13.242
SRR3591713Yellow flower17.170
SRP173429 SRR8316895Juvenile bud stage 8.917
SRR8316896Juvenile bud stage 11.984
SRR8316897Juvenile bud stage 6.706
SRR8316894Third green stage 4.714
SRR8316900Third green stage 11.669
SRR8316901Third green stage 11.782
SRR8316898Complete white stage 5.060
SRR8316899Complete white stage 16.099
SRR8316903Complete white stage 11.461
SRR8316902Silver flowering stage6.953
SRR8316904Silver flowering stage8.203
SRR8316905Silver flowering stage4.563
SRR8316906Gold flowering stage 14.539
SRR8316907Gold flowering stage 14.187
SRR8316908Gold flowering stage 16.505
SRP132670SRR6706286Control14.794
SRR6706287Light intensity 50%14.709
SRR6706288Light intensity 20%14.860
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.197
CNS0095593Slightly white alabastrum(diploid) 29.158
CNS0095594Slightly white alabastrum(diploid) 35.905
CNS0095595Whole white alabastrum(diploid) 27.273
CNS0095596Whole white alabastrum(diploid) 35.346
CNS0095597Whole white alabastrum(diploid) 46.797
CNS0095598Silvery flower (diploied) 112.429
CNS0095599Silvery flower (diploied) 211.105
CNS0095600Silvery flower (diploied) 312.721
CNS0095601Golden flower (diploid) 19.500
CNS0095602Golden flower (diploid) 213.152
CNS0095603Golden flower (diploid) 313.362
CNS0095604Slightly white alabastrum(tetraploid) 114.027
CNS0095605Slightly white alabastrum(tetraploid) 211.755
CNS0095606Slightly white alabastrum(tetraploid) 318.726
CNS0095607Whole white alabastrum(tetraploid) 112.123
CNS0095608Whole white alabastrum(tetraploid) 28.120
CNS0095609Whole white alabastrum(tetraploid) 315.976
CNS0095610Silvery flower (tetraploid) 118.905
CNS0095611Silvery flower (tetraploid) 213.700
CNS0095612Silvery flower (tetraploid) 318.612
CNS0095613Golden flower (tetraploid) 112.580
CNS0095614Golden flower (tetraploid) 216.500
CNS0095615Golden flower (tetraploid) 315.297
CRA001975CRR073297Stem 114.233
CRR073298Stem 214.264
CRR073299Stem 310.821
CRR073300Leaf 114.861
CRR073301Leaf 213.741
CRR073302Leaf 310.590
CRR073303Juvenile bud 19.178
CRR073304Juvenile bud 28.092
CRR073305Juvenile bud 316.955
CRR073306Third green 17.367
CRR073307Third green 26.430
CRR073308Third green 36.792
CRR073309Second white 17.346
CRR073310Second white 29.783
CRR073311Second white 310.048
CRR073312Silver flowering 18.490
CRR073313Silver flowering 28.639
CRR073314Silver flowering 310.056
CRR073315Gold flowering 17.259
CRR073316Gold flowering 211.279
CRR073317Gold flowering 37.922
CRR073318Tawny withering 111.210
CRR073319Tawny withering 29.470
CRR073320Tawny withering 310.177