Gene detail

Detail information of GWHGAAZE024095

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664174.1	6.5188E-108	PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Vitis vinifera]
COG	YP_007127003.1	2E-31	protein translocase subunit secA
Swissprot	tr\|D8WUA4\|SECA2_ARATH	9E-101	Protein translocase subunit SECA2, chloroplastic (Precursor)
trEMBL	tr\|F6H0I5\|F6H0I5_VITVI	2E-108	Protein translocase subunit SecA {ECO:0000256\|RuleBase:RU003874}
TAIR10	AT1G21650.2	2E-87	Preprotein translocase SecA family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34763508	34768335	-
GWHAAZE00000007	mRNA	34763508	34768335	-
GWHAAZE00000007	exon	34768206	34768335	-
GWHAAZE00000007	exon	34767272	34767561	-
GWHAAZE00000007	exon	34764939	34764994	-
GWHAAZE00000007	exon	34764047	34764164	-
GWHAAZE00000007	exon	34763508	34763600	-
GWHAAZE00000007	CDS	34768206	34768335	-
GWHAAZE00000007	CDS	34767272	34767561	-
GWHAAZE00000007	CDS	34764939	34764994	-
GWHAAZE00000007	CDS	34764047	34764164	-
GWHAAZE00000007	CDS	34763508	34763600	-

Transcript Sequence
>GWHTAAZE024129 ATGTTTTTTCACCTTTTCTCATTGAAAATGTTTCAGATGCTTGCAAAAGAAGTTATAGAGGACAGCTTGCTTTCTTTTATGACCCAAGATGCTCGGATATTGAAGTTGACGGAGAGCCAATGTCACAAAGCTAAGTTCATATGCAAAAGTGAGGGTAAGAGATGGACATATCAAGAGGCAAAATCGATGATCTCGGAGTCCGTGGAGATGAGTCAGTCAATGGACTCGAAAGAATTAGAGAGCCTAGTTAATGAACAATCAGAGGTGTACCCTCTCAGTCCTTCCATAGCACTTGCTTATCAATCAGTTCTTAAAGATTGTGAAGTTCATTGTTTCAATGAAGGGTTACAAGTAAAAAGACTTGGGGGCCTTCATGTGATTGGAACATCTTTGCATGAATCCCGGAGAATTGATAACCAGCTTCGTGGCAGAGCAGGCAGACAAGGGGATCCTGGATCAACACGGTTTATGGTGAGCTTGCAGGATGAGATGTTTAAGAAGTTTAACTTTGACACTGAATGGGCTGTGAAACTTATATCAAGTATCACAAATGATGAGGATATACCGATTGAACATGATTCAGTTCTTAAACAGCTTGAGGGCCTCCAAATCAAAGCGGAGAAATTCTTCTTTAACATAAGAAAGAGCCTTGTTGAGTTTGATGAAGTTTTAGAGGTATGCATTTGA

Network for GWHGAAZE024095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07516.14	SecA_SW	189	225	5.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03070	secA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0017038	biological_process	protein import
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.511
	SRR3591706	second leaf	1.735
	SRR3591707	mature leaf	1.566
	SRR3591708	Shoot apex	3.726
	SRR3591709	Stem	1.341
	SRR3591710	White floral bud	1.122
	SRR3591711	White flower	3.393
	SRR3591712	Green floral bud	0.868
	SRR3591713	Yellow flower	1.722
SRP173429	SRR8316895	Juvenile bud stage	1.385
	SRR8316896	Juvenile bud stage	2.241
	SRR8316897	Juvenile bud stage	1.404
	SRR8316894	Third green stage	0.657
	SRR8316900	Third green stage	2.726
	SRR8316901	Third green stage	2.195
	SRR8316898	Complete white stage	0.294
	SRR8316899	Complete white stage	1.444
	SRR8316903	Complete white stage	0.724
	SRR8316902	Silver flowering stage	1.219
	SRR8316904	Silver flowering stage	1.223
	SRR8316905	Silver flowering stage	0.962
	SRR8316906	Gold flowering stage	2.461
	SRR8316907	Gold flowering stage	3.362
	SRR8316908	Gold flowering stage	2.110
SRP132670	SRR6706286	Control	2.709
	SRR6706287	Light intensity 50%	2.545
	SRR6706288	Light intensity 20%	2.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.342
	CNS0095593	Slightly white alabastrum(diploid) 2	0.508
	CNS0095594	Slightly white alabastrum(diploid) 3	0.866
	CNS0095595	Whole white alabastrum(diploid) 2	0.602
	CNS0095596	Whole white alabastrum(diploid) 3	0.604
	CNS0095597	Whole white alabastrum(diploid) 4	0.552
	CNS0095598	Silvery flower (diploied) 1	1.567
	CNS0095599	Silvery flower (diploied) 2	1.220
	CNS0095600	Silvery flower (diploied) 3	0.976
	CNS0095601	Golden flower (diploid) 1	0.522
	CNS0095602	Golden flower (diploid) 2	1.075
	CNS0095603	Golden flower (diploid) 3	0.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.492
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.901
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.780
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.188
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.755
	CNS0095610	Silvery flower (tetraploid) 1	2.220
	CNS0095611	Silvery flower (tetraploid) 2	1.257
	CNS0095612	Silvery flower (tetraploid) 3	1.025
	CNS0095613	Golden flower (tetraploid) 1	0.731
	CNS0095614	Golden flower (tetraploid) 2	1.929
	CNS0095615	Golden flower (tetraploid) 3	1.000
CRA001975	CRR073297	Stem 1	1.955
	CRR073298	Stem 2	3.072
	CRR073299	Stem 3	1.081
	CRR073300	Leaf 1	2.668
	CRR073301	Leaf 2	2.268
	CRR073302	Leaf 3	1.233
	CRR073303	Juvenile bud 1	1.469
	CRR073304	Juvenile bud 2	0.651
	CRR073305	Juvenile bud 3	1.866
	CRR073306	Third green 1	0.402
	CRR073307	Third green 2	0.209
	CRR073308	Third green 3	0.106
	CRR073309	Second white 1	0.195
	CRR073310	Second white 2	0.387
	CRR073311	Second white 3	0.726
	CRR073312	Silver flowering 1	0.570
	CRR073313	Silver flowering 2	0.341
	CRR073314	Silver flowering 3	0.130
	CRR073315	Gold flowering 1	2.659
	CRR073316	Gold flowering 2	5.636
	CRR073317	Gold flowering 3	1.139
	CRR073318	Tawny withering 1	1.936
	CRR073319	Tawny withering 2	0.512
	CRR073320	Tawny withering 3	0.598