Gene detail

Detail information of GWHGAAZE024088

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010063937.1	1.5621E-155	PREDICTED: replication factor C subunit 2 [Eucalyptus grandis]
COG	NP_070884.1	2E-46	replication factor C small subunit
Swissprot	tr\|Q9FXM3\|RFC2_ORYSJ	1E-140	Replication factor C subunit 2
trEMBL	tr\|A0A059BZY9\|A0A059BZY9_EUCGR	6E-156	Uncharacterized protein {ECO:0000313\|EMBL:KCW71235.1}
TAIR10	AT1G21690.2	2E-104	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34595536	34603890	-
GWHAAZE00000007	mRNA	34595536	34603890	-
GWHAAZE00000007	exon	34603876	34603890	-
GWHAAZE00000007	exon	34602214	34602293	-
GWHAAZE00000007	exon	34599571	34599690	-
GWHAAZE00000007	exon	34598023	34598143	-
GWHAAZE00000007	exon	34597833	34597895	-
GWHAAZE00000007	exon	34596635	34596694	-
GWHAAZE00000007	exon	34596423	34596548	-
GWHAAZE00000007	exon	34596243	34596326	-
GWHAAZE00000007	exon	34595536	34595640	-
GWHAAZE00000007	CDS	34603876	34603890	-
GWHAAZE00000007	CDS	34602214	34602293	-
GWHAAZE00000007	CDS	34599571	34599690	-
GWHAAZE00000007	CDS	34598023	34598143	-
GWHAAZE00000007	CDS	34597833	34597895	-
GWHAAZE00000007	CDS	34596635	34596694	-
GWHAAZE00000007	CDS	34596423	34596548	-
GWHAAZE00000007	CDS	34596243	34596326	-
GWHAAZE00000007	CDS	34595536	34595640	-

Transcript Sequence
>GWHTAAZE024122 ATGGGTAGAAAAATATGTCCGCATATGCTATTTTATGGCCCACCTGGCACGGGAAAAACCACCACTGCACTTGCCATTGCACATCAGCTTTACGGACCCGAACTCTACAAGTCAAGGGTGCTGGAGCTCAATGCTAGTGATGATCGTGGTATCAATGTAGTTCGCACAAAAATAAAAAATTTTGCTGCTGTTGCTGTAGGTTCTGGTCGTCAAGGGATCATAGAGCCACTGGCTTCTAGATGTGCAAAGTTTAGGTTCAAGCCACTTTCAGAAGAAATCATGACGAGTCGTATTTTACACATTTGCAACGAGGAAGGCCTTAGTTTAGATTCAGAGGCTCTTTCAACCTTAAGTTCTATCTCACAAGGCGATCTTCGTCGAGCTATTACGTATTTGCAGGGAGCTGCTAGGTTATTCGGATCTTCCATTTCATCCAAGGACTTGATTAGTGTGTCTGGGGTGATACCACAGGAGGTTATTGAGACTCTTTTCTCATCTTGCAGAAGTGGTAATTTTGACTTGGCAAACGAGGAGGTTAATAACGTTATTGCAGAGGGGTATCCTGCTTCACAGATGCTTTCTCAGTTGTTTGACATAGTTGTTGAAGCCGAGGATTTATCGGACGAACAGAAAGCAAGAATATGCAAGAAATTGGGCGAAGCTGATAAGCGTTTAGTTGATGGAGGAGACGAGTATCTGCAGCTGTTGGATGTGGCCAGTAATACAATGAGAGCTCTCTGTAATATGCCCCTCGAATTTTCCTATGACGTTTAG

Network for GWHGAAZE024088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	9	60	2.20E-08
PF08542.12	Rep_fac_C	156	239	2.70E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10755	RFC2_4	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005524	molecular_function	ATP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.757
	SRR3591706	second leaf	29.335
	SRR3591707	mature leaf	23.549
	SRR3591708	Shoot apex	84.214
	SRR3591709	Stem	45.214
	SRR3591710	White floral bud	32.993
	SRR3591711	White flower	46.867
	SRR3591712	Green floral bud	32.715
	SRR3591713	Yellow flower	50.531
SRP173429	SRR8316895	Juvenile bud stage	26.763
	SRR8316896	Juvenile bud stage	36.209
	SRR8316897	Juvenile bud stage	12.198
	SRR8316894	Third green stage	15.619
	SRR8316900	Third green stage	38.739
	SRR8316901	Third green stage	41.393
	SRR8316898	Complete white stage	16.927
	SRR8316899	Complete white stage	46.785
	SRR8316903	Complete white stage	24.880
	SRR8316902	Silver flowering stage	18.932
	SRR8316904	Silver flowering stage	27.865
	SRR8316905	Silver flowering stage	12.229
	SRR8316906	Gold flowering stage	43.929
	SRR8316907	Gold flowering stage	46.888
	SRR8316908	Gold flowering stage	31.426
SRP132670	SRR6706286	Control	16.852
	SRR6706287	Light intensity 50%	20.800
	SRR6706288	Light intensity 20%	22.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.650
	CNS0095593	Slightly white alabastrum(diploid) 2	32.120
	CNS0095594	Slightly white alabastrum(diploid) 3	34.103
	CNS0095595	Whole white alabastrum(diploid) 2	26.120
	CNS0095596	Whole white alabastrum(diploid) 3	32.062
	CNS0095597	Whole white alabastrum(diploid) 4	25.775
	CNS0095598	Silvery flower (diploied) 1	25.271
	CNS0095599	Silvery flower (diploied) 2	27.185
	CNS0095600	Silvery flower (diploied) 3	35.910
	CNS0095601	Golden flower (diploid) 1	25.158
	CNS0095602	Golden flower (diploid) 2	27.956
	CNS0095603	Golden flower (diploid) 3	27.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.199
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.010
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.332
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.236
	CNS0095610	Silvery flower (tetraploid) 1	27.556
	CNS0095611	Silvery flower (tetraploid) 2	22.662
	CNS0095612	Silvery flower (tetraploid) 3	26.159
	CNS0095613	Golden flower (tetraploid) 1	23.169
	CNS0095614	Golden flower (tetraploid) 2	22.806
	CNS0095615	Golden flower (tetraploid) 3	14.582
CRA001975	CRR073297	Stem 1	29.926
	CRR073298	Stem 2	24.266
	CRR073299	Stem 3	33.712
	CRR073300	Leaf 1	24.480
	CRR073301	Leaf 2	18.489
	CRR073302	Leaf 3	22.510
	CRR073303	Juvenile bud 1	28.275
	CRR073304	Juvenile bud 2	20.294
	CRR073305	Juvenile bud 3	30.072
	CRR073306	Third green 1	20.999
	CRR073307	Third green 2	18.431
	CRR073308	Third green 3	17.039
	CRR073309	Second white 1	28.198
	CRR073310	Second white 2	27.282
	CRR073311	Second white 3	21.056
	CRR073312	Silver flowering 1	21.420
	CRR073313	Silver flowering 2	17.042
	CRR073314	Silver flowering 3	16.857
	CRR073315	Gold flowering 1	12.711
	CRR073316	Gold flowering 2	13.810
	CRR073317	Gold flowering 3	8.772
	CRR073318	Tawny withering 1	21.615
	CRR073319	Tawny withering 2	19.666
	CRR073320	Tawny withering 3	30.086