Gene detail

Detail information of GWHGAAZE024085

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010664182.1	PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9XI07\|SWI3C_ARATH	SWI/SNF complex subunit SWI3C
trEMBL	tr\|G7J4Z5\|G7J4Z5_MEDTR	SWI/SNF complex protein {ECO:0000313\|EMBL:AES72308.2}
TAIR10	AT1G21700.1	SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34498242	34508039	-
GWHAAZE00000007	mRNA	34498242	34508039	-
GWHAAZE00000007	exon	34508021	34508039	-
GWHAAZE00000007	exon	34507315	34507686	-
GWHAAZE00000007	exon	34505711	34506246	-
GWHAAZE00000007	exon	34504429	34504792	-
GWHAAZE00000007	exon	34504218	34504291	-
GWHAAZE00000007	exon	34503487	34503620	-
GWHAAZE00000007	exon	34502587	34502654	-
GWHAAZE00000007	exon	34502327	34502511	-
GWHAAZE00000007	exon	34501200	34501304	-
GWHAAZE00000007	exon	34499111	34499400	-
GWHAAZE00000007	exon	34498242	34498305	-
GWHAAZE00000007	CDS	34508021	34508039	-
GWHAAZE00000007	CDS	34507315	34507686	-
GWHAAZE00000007	CDS	34505711	34506246	-
GWHAAZE00000007	CDS	34504429	34504792	-
GWHAAZE00000007	CDS	34504218	34504291	-
GWHAAZE00000007	CDS	34503487	34503620	-
GWHAAZE00000007	CDS	34502587	34502654	-
GWHAAZE00000007	CDS	34502327	34502511	-
GWHAAZE00000007	CDS	34501200	34501304	-
GWHAAZE00000007	CDS	34499111	34499400	-
GWHAAZE00000007	CDS	34498242	34498305	-

Transcript Sequence
>GWHTAAZE024119 ATGCCAGCTTCTTCTTCAGCTGCCACGATTGCACCCGAATCCGAGGTGGTATTAAATAGTGCCACTCGAATCTCCGACCTTCCTTATGTGGTTAAACATATAGTGCATCGGCCCCACTTGTCGGTGATGGAGATTGTGACTATGGAGAGGGCGAATCAGTTAGGGCAGATTATGGGGGAGGGGCAGAACAGTGTCGTTTTGGAGAATTTGTCATACGGGCAGTTACAGGCTTTGTCAGCTGTGCCTGCGGATAGTCCGAACTTGGTGGAGCAGGATAGAGGGGAGGGGTATTTGTCGGCTTATGTGATTACACCGCCGGGGATTATGGAGGGGAAGGGAGTGATGAAGAGGTTTGGGAGTAATATGGTTCATATTGTACCAATGCACGCAGATTGGTTTTCACCTACTACAGTGCATAGATTGGAAAGACAAGTAGTACCACATTATTTCTCTGGGAAATCAGTGGATCACACGGCGGAAAAATATATGGAGTGCCGGAACCGTATTGTTGGTAGGTACATGGAGAATCCAGAGGACAGGCTTTCAATTGCCGATTGCCATGGTTTGGTAGCTGGTGTTGCTATTGATGATATGACTCGAATTGTCCGGTTTTTGGATCACTGGGGGATCATTAATTACTGTGCTTCTACTCCAGATCATGGGGCTCGAAATGATGGGTCGTGTTTGATTGAGAATTCAAATGGGGAACTCTCGGTCCCTGCAACTGCTTTGAAATCCATTGATAGTTTGATCCGTTTTGATAAGCCCAAATGTGGACTCAAGGCATCAAATGTTTATCCAGAAATGACATGTAATGGTGATGATGGATCTGACTTAGATATCAGGATCCGTGAACGATTGTCAGAGAACCAGTGCAATTATTGTTCTCAACCTATTCCAATTGTGTATTATCAGTCGCAGAAGGAGATTGATGTACTGTTATGCACGGATTGCTTCCACGATGGGAGATTTGTCATTGGTCATTCAAGTCTAGATTTCATAAAAGTCGACTCCATGAAAGATTATGGAGATCTTGATGGAGAATGCTGGACCGATCAAGAAACACTACTGCTTCTTGAGGCAATGGAACTCTACAATGAGAACTGGAATGAAATTGCTGAGCACGTTGGCACAAAGTCCAAAGCTCAATGCATCCTTCATTTTCTCCGTTTGCCCATTGATGACGCTCCACTGGATAATATTGATGTTCCAAGTTCTTCTATCTCGTCAAAATCGATTAAGAGAGATAATTGTGGAAGAGCACATTCAAAATCAAATGGGAAAGCTGCAGGGTCTGGGGACCAAGACCCTGATTGTGAAAGGAGGCTTCCTTTTGCAAATTCTGGGAATCCGGTGATGTCCCTGGTTGCCTTTCTGGCCTCAGCAGTTGGACCAAGGGTTGCTGCAGCTTGCGCACATGAATGCTTGGCAGTTTTGGCTGACAACGTACATGCTTCTGGAAACATGGGGCAGATGGATGGGTCGGAGTTTGGTAATAGGATGAACGTAGAAAGCATGCATGGTAAGGAGCGTGGTCCTCATGGAGAAAGCACAAGTCAACAAAAAGATGAAAACTTGGGACAAGGTCCACGGAGTCAAGTGGATGCAGAGGTTAGTACTCAATTGTCTGCTGAAAAAGTAAGAGCTGCTGCCAAAGCTGGTCTTGCTGCTGCGGCAACCAAGGCTAAGCTTTTTGCAGATCATGAAGAACGTGAAATTCAAAGGCTTTCTGCTAATATAATTAATCATCAGTGGGATCACCCGGATGAGGTAGGTCCTTTAGGATTCATTGACGCAGGATCTGAGAGATATCAACAATCCCCTTTGTATCACAAGCCTCACCCACTTCAAAAACAGTTGAAGAGATTAGAGCTGAAGCTAAAGCAATTTGCGGAAGTGGAGACCTTGTTAATGAAAGAATGCGAGCAAGTGGAGAGGTTGAGGCAGAGAATTGCTGCCGAGCGTGCCCTCATCTTATCATCAACCCAACAATTTGGTGGACCCTCCAACGGAGGAGTGCCACGATCGACCATGGTCCTACCTGGTGGCAACAGTGGTCCTGCCGCGGTGGTCAATAACAACAATGCTGGAAATAATAATAGGCCACAAGTCGTCTCGGGATCATCTTCACAGCCATTTGTTTCTGGGAACCACTGGGGGCAGTATGGTGGTGCGCAGGCCAAGATGCCGATGGGATCAATAACGCGCTGA

Network for GWHGAAZE024085

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	127	213	4.10E-20
PF00249.32	Myb_DNA-binding	349	391	1.30E-11
PF16495.6	SWIRM-assoc_1	553	584	2.00E-08
PF16495.6	SWIRM-assoc_1	617	664	3.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.664
	SRR3591706	second leaf	18.635
	SRR3591707	mature leaf	20.881
	SRR3591708	Shoot apex	31.793
	SRR3591709	Stem	22.576
	SRR3591710	White floral bud	20.998
	SRR3591711	White flower	22.767
	SRR3591712	Green floral bud	20.944
	SRR3591713	Yellow flower	12.652
SRP173429	SRR8316895	Juvenile bud stage	14.410
	SRR8316896	Juvenile bud stage	18.533
	SRR8316897	Juvenile bud stage	8.279
	SRR8316894	Third green stage	7.637
	SRR8316900	Third green stage	17.594
	SRR8316901	Third green stage	16.355
	SRR8316898	Complete white stage	4.495
	SRR8316899	Complete white stage	25.436
	SRR8316903	Complete white stage	8.428
	SRR8316902	Silver flowering stage	5.641
	SRR8316904	Silver flowering stage	8.938
	SRR8316905	Silver flowering stage	3.914
	SRR8316906	Gold flowering stage	11.761
	SRR8316907	Gold flowering stage	8.994
	SRR8316908	Gold flowering stage	10.109
SRP132670	SRR6706286	Control	19.179
	SRR6706287	Light intensity 50%	19.318
	SRR6706288	Light intensity 20%	20.697
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.586
	CNS0095593	Slightly white alabastrum(diploid) 2	13.020
	CNS0095594	Slightly white alabastrum(diploid) 3	11.809
	CNS0095595	Whole white alabastrum(diploid) 2	11.881
	CNS0095596	Whole white alabastrum(diploid) 3	9.846
	CNS0095597	Whole white alabastrum(diploid) 4	11.609
	CNS0095598	Silvery flower (diploied) 1	21.841
	CNS0095599	Silvery flower (diploied) 2	15.641
	CNS0095600	Silvery flower (diploied) 3	15.139
	CNS0095601	Golden flower (diploid) 1	20.713
	CNS0095602	Golden flower (diploid) 2	18.252
	CNS0095603	Golden flower (diploid) 3	17.232
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.265
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.763
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.926
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.470
	CNS0095610	Silvery flower (tetraploid) 1	15.934
	CNS0095611	Silvery flower (tetraploid) 2	15.447
	CNS0095612	Silvery flower (tetraploid) 3	10.306
	CNS0095613	Golden flower (tetraploid) 1	8.218
	CNS0095614	Golden flower (tetraploid) 2	13.196
	CNS0095615	Golden flower (tetraploid) 3	9.607
CRA001975	CRR073297	Stem 1	25.608
	CRR073298	Stem 2	23.001
	CRR073299	Stem 3	23.071
	CRR073300	Leaf 1	23.255
	CRR073301	Leaf 2	22.194
	CRR073302	Leaf 3	18.746
	CRR073303	Juvenile bud 1	16.354
	CRR073304	Juvenile bud 2	10.754
	CRR073305	Juvenile bud 3	20.362
	CRR073306	Third green 1	4.253
	CRR073307	Third green 2	3.929
	CRR073308	Third green 3	5.996
	CRR073309	Second white 1	4.050
	CRR073310	Second white 2	6.452
	CRR073311	Second white 3	4.552
	CRR073312	Silver flowering 1	4.046
	CRR073313	Silver flowering 2	5.089
	CRR073314	Silver flowering 3	4.151
	CRR073315	Gold flowering 1	17.328
	CRR073316	Gold flowering 2	27.337
	CRR073317	Gold flowering 3	19.041
	CRR073318	Tawny withering 1	18.455
	CRR073319	Tawny withering 2	19.384
	CRR073320	Tawny withering 3	22.430