Gene detail

Detail information of GWHGAAZE024084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW71243.1	8.3863E-132	hypothetical protein EUGRSUZ_F04339 [Eucalyptus grandis]
COG	YP_686783.1	6E-24	20S proteasome, beta subunit
Swissprot	tr\|Q9XI05\|PSB3A_ARATH	4E-129	Proteasome subunit beta type-3-A
trEMBL	tr\|A0A059BYC6\|A0A059BYC6_EUCGR	3E-132	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT1G21720.1	2E-102	proteasome beta subunit C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34483327	34493216	+
GWHAAZE00000007	mRNA	34483327	34493216	+
GWHAAZE00000007	exon	34483327	34483370	+
GWHAAZE00000007	exon	34483484	34483568	+
GWHAAZE00000007	exon	34486416	34486597	+
GWHAAZE00000007	exon	34487249	34487356	+
GWHAAZE00000007	exon	34488209	34488298	+
GWHAAZE00000007	exon	34491920	34492004	+
GWHAAZE00000007	exon	34493118	34493216	+
GWHAAZE00000007	CDS	34483327	34483370	+
GWHAAZE00000007	CDS	34483484	34483568	+
GWHAAZE00000007	CDS	34486416	34486597	+
GWHAAZE00000007	CDS	34487249	34487356	+
GWHAAZE00000007	CDS	34488209	34488298	+
GWHAAZE00000007	CDS	34491920	34492004	+
GWHAAZE00000007	CDS	34493118	34493216	+

Transcript Sequence
>GWHTAAZE024118 ATGGGGAAGTTTGTTTCCACCGGAAAGTTTGGCCGGTGGGGAAAGGTTAGTGGGGAAGGAGGAGGGGTTGATGGAGGGTTTGTGATGGGTGATTGTGTCTTCTTCATAATGATCGGTAGTGTTCTTGTTATATTCGAGTACAATGGAAGTGCCCTAGTAGCTATGGTTGGCAAGAACTGCTTCGCCATCGCCAGTGACCGCCGCCTCGGCGTTCAGCTTCAGACCATCGCCACTGATTTCCAGCGTATCTATAAGATCCACGACAGGCTTTTCATCGGCCTCTCTGGACTCGCCACTGATGCTCAAACTCTGTATCAGAGGCTTGTGTTTCGACACAAGTTGTATCAGCTTCGAGAAGAGAGGGATATGAAGCCTGAAACTTTTGCTAGTCTTGTCTCTGCGATTCTTTACGAGAAAAGGTTTGGTCCATATTTCTGCCAGCCTGTGATTGCTGGATTGGGAGATGAAGGCAAGCCCTTCATTTGCACAATGGATTCTATTGGAGCCAAGGAGCTTGCAAAAGATTTTGTTGTTGCTGGCACTGCCTCCGAGTCTCTTTATGGTGCCTGTGAGTCAATGTTCAAGCCTGACATGGAACCTGAAGAATTGTTCGAGACAATTTCTCAAGCACTGCTTTCATCTGTCGACCGTGACTGTTTGGCAGGTTGGGGAGGACATGTCTACGTTGTGTAA

Network for GWHGAAZE024084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	48	230	1.20E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02735	PSMB3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0019774	cellular_component	proteasome core complex, beta-subunit complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.456
	SRR3591706	second leaf	32.255
	SRR3591707	mature leaf	21.119
	SRR3591708	Shoot apex	57.735
	SRR3591709	Stem	53.564
	SRR3591710	White floral bud	33.078
	SRR3591711	White flower	31.990
	SRR3591712	Green floral bud	52.190
	SRR3591713	Yellow flower	22.435
SRP173429	SRR8316895	Juvenile bud stage	23.636
	SRR8316896	Juvenile bud stage	36.224
	SRR8316897	Juvenile bud stage	25.941
	SRR8316894	Third green stage	17.784
	SRR8316900	Third green stage	49.599
	SRR8316901	Third green stage	47.757
	SRR8316898	Complete white stage	16.557
	SRR8316899	Complete white stage	47.855
	SRR8316903	Complete white stage	20.748
	SRR8316902	Silver flowering stage	8.142
	SRR8316904	Silver flowering stage	12.390
	SRR8316905	Silver flowering stage	5.051
	SRR8316906	Gold flowering stage	18.353
	SRR8316907	Gold flowering stage	18.601
	SRR8316908	Gold flowering stage	18.987
SRP132670	SRR6706286	Control	39.636
	SRR6706287	Light intensity 50%	37.857
	SRR6706288	Light intensity 20%	45.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.500
	CNS0095593	Slightly white alabastrum(diploid) 2	47.084
	CNS0095594	Slightly white alabastrum(diploid) 3	37.154
	CNS0095595	Whole white alabastrum(diploid) 2	36.696
	CNS0095596	Whole white alabastrum(diploid) 3	37.141
	CNS0095597	Whole white alabastrum(diploid) 4	35.014
	CNS0095598	Silvery flower (diploied) 1	24.043
	CNS0095599	Silvery flower (diploied) 2	22.646
	CNS0095600	Silvery flower (diploied) 3	26.430
	CNS0095601	Golden flower (diploid) 1	16.884
	CNS0095602	Golden flower (diploid) 2	23.961
	CNS0095603	Golden flower (diploid) 3	22.836
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.440
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.200
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.405
	CNS0095610	Silvery flower (tetraploid) 1	25.895
	CNS0095611	Silvery flower (tetraploid) 2	27.561
	CNS0095612	Silvery flower (tetraploid) 3	20.317
	CNS0095613	Golden flower (tetraploid) 1	10.621
	CNS0095614	Golden flower (tetraploid) 2	15.602
	CNS0095615	Golden flower (tetraploid) 3	10.106
CRA001975	CRR073297	Stem 1	63.379
	CRR073298	Stem 2	63.405
	CRR073299	Stem 3	102.034
	CRR073300	Leaf 1	70.577
	CRR073301	Leaf 2	79.008
	CRR073302	Leaf 3	118.198
	CRR073303	Juvenile bud 1	110.558
	CRR073304	Juvenile bud 2	94.528
	CRR073305	Juvenile bud 3	81.152
	CRR073306	Third green 1	32.816
	CRR073307	Third green 2	43.997
	CRR073308	Third green 3	33.631
	CRR073309	Second white 1	32.095
	CRR073310	Second white 2	16.373
	CRR073311	Second white 3	13.582
	CRR073312	Silver flowering 1	10.294
	CRR073313	Silver flowering 2	14.809
	CRR073314	Silver flowering 3	9.515
	CRR073315	Gold flowering 1	53.337
	CRR073316	Gold flowering 2	53.642
	CRR073317	Gold flowering 3	52.816
	CRR073318	Tawny withering 1	94.204
	CRR073319	Tawny withering 2	82.580
	CRR073320	Tawny withering 3	111.320