Gene detail

Detail information of GWHGAAZE024083

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008338666.1	6.7512E-139	PREDICTED: N-glycosylase/DNA lyase OGG1 [Malus domestica]
COG	YP_001180299.1	2E-35	8-oxoguanine DNA glycosylase domain-containing protein
Swissprot	tr\|Q9FNY7\|OGG1_ARATH	5E-125	DNA-(apurinic or apyrimidinic site) lyase
trEMBL	tr\|M5XQI4\|M5XQI4_PRUPE	8E-135	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23798.1}
TAIR10	AT1G21710.1	1E-97	8-oxoguanine-DNA glycosylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34480608	34483702	-
GWHAAZE00000007	mRNA	34480608	34483702	-
GWHAAZE00000007	exon	34480608	34480863	-
GWHAAZE00000007	exon	34482891	34483593	-
GWHAAZE00000007	exon	34483699	34483702	-
GWHAAZE00000007	CDS	34483699	34483702	-
GWHAAZE00000007	CDS	34482891	34483593	-
GWHAAZE00000007	CDS	34480608	34480863	-

Transcript Sequence
>GWHTAAZE024117 ATGCGGTACTTCTGTATGCAATCACTTACAACAAGAACACTACCGATCATTATGAAGAAGACACAATCACCCATCACAAACCCTCCATCAACCCCTCCTCCTTCCCCACTAACCCTAATTCCCAAATCCCACTCTTCCAAAAAACCCAAAAGAACCCTTCTCCCAAATCTAAACCCTCAATGGCTACCCCTCCAAATCCCCAAAACAGAGCTCTCATTGCCCCTCACTTTCCCCACCGGCCAAACTTTCCGGTGGAAACAAACTTCCCCATTTCAATTCACAGGCCCAATCGGCCCCCACCTAATCTCCCTCAAACACAATGAAAATCTTGAAATCCTTTACTGCATTCACCACACCACTTCTTCTCTTTTAGAAGCGAGGTTAAATTTGATGGACTTTCTCAATTCGGACATTTGTTTGGGTGATTTGTGGGAGGAGTTTTCGTCCTCGGATTCGAGGTTTAAAGAGCTGGCTAGTGTTTTGGGCGGTGCTCGTGTGCTTAGACAGGATCCGTTTGAGTGTTTGATTCAGTTCATTTGTTCTTCTAATAATAATATTGGGAGGATTACTCAAATGGTTGATTATATATCTTCCTTAGGGAAGTATTTGGGGAGTGTTGAAGGGTTTGATTTCCATGAGTTTCCTTCTTTGGAAAGGTTGTTGATGGTTTCTGAGGGGGAGCTTAGAGACGCGGGTTTCGGTTATAGGGCCAAATACATAACCGGTACTGTGGATGCTTTGCAATCAAAACCTGGCGGAGGTTTGGAATGGCTTACTTCTCTTCGCAAGTTAGATCTTCAAAGGGCAATCGAGGCTCTCTGTACTCTACCTGGCGTTGGTCCCAAGGTAGCGGCTTGTGTTGCTCTCTTCTCGCTAGATCAACATCATGCCATTCCTGTTGATACTCACGTGTGGAAGGTGAGCTTTTCTGGATTTTCACTTAAAATGGTTCTTTTTCACTAG

Network for GWHGAAZE024083

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07934.13	OGG_N	64	175	3.10E-21
PF00730.26	HhH-GPD	176	307	1.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03660	OGG1	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006284	biological_process	base-excision repair
GO:0006289	biological_process	nucleotide-excision repair
GO:0003824	molecular_function	catalytic activity
GO:0003684	molecular_function	damaged DNA binding
GO:0008534	molecular_function	oxidized purine nucleobase lesion DNA N-glycosylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.709
	SRR3591706	second leaf	8.711
	SRR3591707	mature leaf	9.369
	SRR3591708	Shoot apex	13.247
	SRR3591709	Stem	10.902
	SRR3591710	White floral bud	7.151
	SRR3591711	White flower	8.347
	SRR3591712	Green floral bud	11.118
	SRR3591713	Yellow flower	6.885
SRP173429	SRR8316895	Juvenile bud stage	9.189
	SRR8316896	Juvenile bud stage	10.714
	SRR8316897	Juvenile bud stage	4.959
	SRR8316894	Third green stage	4.813
	SRR8316900	Third green stage	13.938
	SRR8316901	Third green stage	10.490
	SRR8316898	Complete white stage	3.617
	SRR8316899	Complete white stage	13.742
	SRR8316903	Complete white stage	6.678
	SRR8316902	Silver flowering stage	2.517
	SRR8316904	Silver flowering stage	4.475
	SRR8316905	Silver flowering stage	3.256
	SRR8316906	Gold flowering stage	7.841
	SRR8316907	Gold flowering stage	5.399
	SRR8316908	Gold flowering stage	5.387
SRP132670	SRR6706286	Control	15.807
	SRR6706287	Light intensity 50%	14.748
	SRR6706288	Light intensity 20%	16.503
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.130
	CNS0095593	Slightly white alabastrum(diploid) 2	4.955
	CNS0095594	Slightly white alabastrum(diploid) 3	6.746
	CNS0095595	Whole white alabastrum(diploid) 2	5.184
	CNS0095596	Whole white alabastrum(diploid) 3	4.697
	CNS0095597	Whole white alabastrum(diploid) 4	3.464
	CNS0095598	Silvery flower (diploied) 1	8.571
	CNS0095599	Silvery flower (diploied) 2	5.158
	CNS0095600	Silvery flower (diploied) 3	10.508
	CNS0095601	Golden flower (diploid) 1	4.592
	CNS0095602	Golden flower (diploid) 2	7.700
	CNS0095603	Golden flower (diploid) 3	6.951
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.166
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.803
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.201
	CNS0095610	Silvery flower (tetraploid) 1	10.380
	CNS0095611	Silvery flower (tetraploid) 2	10.047
	CNS0095612	Silvery flower (tetraploid) 3	5.054
	CNS0095613	Golden flower (tetraploid) 1	4.717
	CNS0095614	Golden flower (tetraploid) 2	7.237
	CNS0095615	Golden flower (tetraploid) 3	4.872
CRA001975	CRR073297	Stem 1	12.175
	CRR073298	Stem 2	10.944
	CRR073299	Stem 3	9.759
	CRR073300	Leaf 1	12.283
	CRR073301	Leaf 2	9.975
	CRR073302	Leaf 3	8.255
	CRR073303	Juvenile bud 1	11.551
	CRR073304	Juvenile bud 2	8.212
	CRR073305	Juvenile bud 3	11.780
	CRR073306	Third green 1	0.231
	CRR073307	Third green 2	0.554
	CRR073308	Third green 3	0.638
	CRR073309	Second white 1	2.271
	CRR073310	Second white 2	0.975
	CRR073311	Second white 3	0.752
	CRR073312	Silver flowering 1	0.730
	CRR073313	Silver flowering 2	0.425
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.237
	CRR073316	Gold flowering 2	7.679
	CRR073317	Gold flowering 3	4.988
	CRR073318	Tawny withering 1	5.904
	CRR073319	Tawny withering 2	5.217
	CRR073320	Tawny withering 3	6.890