Gene detail

Detail information of GWHGAAZE024075

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006434226.1	2.672E-166	hypothetical protein CICLE_v10001194mg [Citrus clementina]
COG	YP_008377922.1	4E-15	catalase / peroxidase
Swissprot	tr\|P0C0L1\|APX6_ORYSJ	5E-160	Probable L-ascorbate peroxidase 6, chloroplastic (Precursor)
trEMBL	tr\|V4TCT8\|V4TCT8_9ROSI	1E-166	Uncharacterized protein {ECO:0000313\|EMBL:ESR47466.1}
TAIR10	AT4G08390.3	2E-126	stromal ascorbate peroxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34354433	34358577	-
GWHAAZE00000007	mRNA	34354433	34358577	-
GWHAAZE00000007	exon	34354433	34354438	-
GWHAAZE00000007	exon	34355101	34355205	-
GWHAAZE00000007	exon	34355308	34355385	-
GWHAAZE00000007	exon	34355474	34355548	-
GWHAAZE00000007	exon	34356700	34356786	-
GWHAAZE00000007	exon	34357133	34357200	-
GWHAAZE00000007	exon	34357897	34357984	-
GWHAAZE00000007	exon	34358068	34358168	-
GWHAAZE00000007	exon	34358249	34358369	-
GWHAAZE00000007	exon	34358572	34358577	-
GWHAAZE00000007	CDS	34358572	34358577	-
GWHAAZE00000007	CDS	34358249	34358369	-
GWHAAZE00000007	CDS	34358068	34358168	-
GWHAAZE00000007	CDS	34357897	34357984	-
GWHAAZE00000007	CDS	34357133	34357200	-
GWHAAZE00000007	CDS	34356700	34356786	-
GWHAAZE00000007	CDS	34355474	34355548	-
GWHAAZE00000007	CDS	34355308	34355385	-
GWHAAZE00000007	CDS	34355101	34355205	-
GWHAAZE00000007	CDS	34354433	34354438	-

Transcript Sequence
>GWHTAAZE024109 ATGTACGTTCGCCTAGGATGGCATGATGCTGGCACTTATAATAAGAATATTGAGGAGTGGCCAAAAAAAGGTGGAGCTAATGGAAGTTTAAGATTTGAAGTTGAACTGAAACATGCAGCAAATGCTGGGCTAGTAAATGCGCTTAAACTTCTCCAGGATATCAAAGAGAAGTACTCAGGTGTGACTTATGCTGACTTATTCCAGTTGGCCAGTGCTACTGCTGTGGAGGAGGCTGGTGGGCCTAAAATCCCTATGAAGTATGGAAGAGTAGATGTTTCTGTACCTGAGCAATGTCCAGAAGAAGGGAGGCTCCCTGCTGCGGGTCCACCTTCTCCTGCTTCTCATTTACGCGAGGTCTTCTACAGGATGGGATTGAATGATAAGGAAATTGTTGCACTATCTGGTGCACATACATTGGGAAGGTCCAGACCAGAACGTAGTGGTTGGGGCAAGCCGGAGACTAAATATACGAAAGATGGACCAGGAGCCCCAGGAGGACAATCCTGGACAGTAGAGTGGCTGAAATTTGATAATTTCTATTTCAAGGATATCAAGGAAAAAAGAGATGAAGATCTACTTGTTTTGCCAACAGATGCTGTTCTTTTTGAAGATCCTTCATTTAAAGTATATGCTGAGAAATATGCTGAAGATCAGGAGGCATTTTTCAAGGATTATGCGGAGGCTCATGCCAAACTTAGCAACCTTGGATCCAAATTTGATCCTCCTGAGGATTAA

Network for GWHGAAZE024075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	3	217	7.70E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	86.117
	SRR3591706	second leaf	69.143
	SRR3591707	mature leaf	43.587
	SRR3591708	Shoot apex	104.827
	SRR3591709	Stem	58.149
	SRR3591710	White floral bud	80.491
	SRR3591711	White flower	85.884
	SRR3591712	Green floral bud	119.177
	SRR3591713	Yellow flower	89.925
SRP173429	SRR8316895	Juvenile bud stage	72.903
	SRR8316896	Juvenile bud stage	105.112
	SRR8316897	Juvenile bud stage	67.087
	SRR8316894	Third green stage	44.343
	SRR8316900	Third green stage	151.706
	SRR8316901	Third green stage	136.689
	SRR8316898	Complete white stage	37.355
	SRR8316899	Complete white stage	111.514
	SRR8316903	Complete white stage	48.900
	SRR8316902	Silver flowering stage	35.634
	SRR8316904	Silver flowering stage	38.499
	SRR8316905	Silver flowering stage	17.346
	SRR8316906	Gold flowering stage	68.432
	SRR8316907	Gold flowering stage	63.278
	SRR8316908	Gold flowering stage	78.744
SRP132670	SRR6706286	Control	117.175
	SRR6706287	Light intensity 50%	120.022
	SRR6706288	Light intensity 20%	132.756
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	105.624
	CNS0095593	Slightly white alabastrum(diploid) 2	125.165
	CNS0095594	Slightly white alabastrum(diploid) 3	106.910
	CNS0095595	Whole white alabastrum(diploid) 2	121.744
	CNS0095596	Whole white alabastrum(diploid) 3	126.262
	CNS0095597	Whole white alabastrum(diploid) 4	115.984
	CNS0095598	Silvery flower (diploied) 1	68.527
	CNS0095599	Silvery flower (diploied) 2	73.015
	CNS0095600	Silvery flower (diploied) 3	81.860
	CNS0095601	Golden flower (diploid) 1	62.495
	CNS0095602	Golden flower (diploid) 2	73.535
	CNS0095603	Golden flower (diploid) 3	77.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	148.909
	CNS0095605	Slightly white alabastrum(tetraploid) 2	140.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	133.192
	CNS0095607	Whole white alabastrum(tetraploid) 1	114.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	99.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	138.104
	CNS0095610	Silvery flower (tetraploid) 1	95.212
	CNS0095611	Silvery flower (tetraploid) 2	83.286
	CNS0095612	Silvery flower (tetraploid) 3	69.780
	CNS0095613	Golden flower (tetraploid) 1	59.902
	CNS0095614	Golden flower (tetraploid) 2	95.052
	CNS0095615	Golden flower (tetraploid) 3	39.945
CRA001975	CRR073297	Stem 1	92.507
	CRR073298	Stem 2	89.564
	CRR073299	Stem 3	92.664
	CRR073300	Leaf 1	96.854
	CRR073301	Leaf 2	94.113
	CRR073302	Leaf 3	107.180
	CRR073303	Juvenile bud 1	98.645
	CRR073304	Juvenile bud 2	89.564
	CRR073305	Juvenile bud 3	85.756
	CRR073306	Third green 1	38.615
	CRR073307	Third green 2	34.854
	CRR073308	Third green 3	36.112
	CRR073309	Second white 1	39.242
	CRR073310	Second white 2	34.659
	CRR073311	Second white 3	29.465
	CRR073312	Silver flowering 1	28.755
	CRR073313	Silver flowering 2	38.591
	CRR073314	Silver flowering 3	33.906
	CRR073315	Gold flowering 1	69.443
	CRR073316	Gold flowering 2	77.327
	CRR073317	Gold flowering 3	38.973
	CRR073318	Tawny withering 1	72.693
	CRR073319	Tawny withering 2	65.642
	CRR073320	Tawny withering 3	72.767