Gene detail

Detail information of GWHGAAZE024071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285864.1	0	PREDICTED: protein disulfide-isomerase [Vitis vinifera]
COG	YP_008682226.1	1E-16	thioredoxin 2
Swissprot	tr\|Q9XF61\|PDI_DATGL	0	Protein disulfide-isomerase (Precursor)
trEMBL	tr\|E0CR49\|E0CR49_VITVI	0	Protein disulfide-isomerase {ECO:0000256\|RuleBase:RU361130}
TAIR10	AT1G21750.1	4E-174	PDI-like 1-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34302668	34310634	-
GWHAAZE00000007	mRNA	34302668	34310634	-
GWHAAZE00000007	exon	34302668	34303051	-
GWHAAZE00000007	exon	34303952	34304145	-
GWHAAZE00000007	exon	34304302	34304414	-
GWHAAZE00000007	exon	34304992	34305109	-
GWHAAZE00000007	exon	34305662	34305781	-
GWHAAZE00000007	exon	34305972	34306109	-
GWHAAZE00000007	exon	34306700	34306849	-
GWHAAZE00000007	exon	34307175	34307363	-
GWHAAZE00000007	exon	34307457	34307744	-
GWHAAZE00000007	exon	34307827	34307857	-
GWHAAZE00000007	exon	34310456	34310634	-
GWHAAZE00000007	CDS	34310456	34310634	-
GWHAAZE00000007	CDS	34307827	34307857	-
GWHAAZE00000007	CDS	34307457	34307744	-
GWHAAZE00000007	CDS	34307175	34307363	-
GWHAAZE00000007	CDS	34306700	34306849	-
GWHAAZE00000007	CDS	34305972	34306109	-
GWHAAZE00000007	CDS	34305662	34305781	-
GWHAAZE00000007	CDS	34304992	34305109	-
GWHAAZE00000007	CDS	34304302	34304414	-
GWHAAZE00000007	CDS	34303957	34304145	-
GWHAAZE00000007	three_prime_UTR	34303952	34303956	-
GWHAAZE00000007	three_prime_UTR	34302668	34303051	-

Transcript Sequence
>GWHTAAZE024105 ATGGCGTCTAGGGTTTTGATCGCTCTCTTCTTTCTCTTCGCCATCCCTTTCATGGCTTCATATGTTATCTCAGCTTCCGAAAGTGAATCGAAGGAGTTCGTTCTCACTCTCGACCACTCCAATTTCAACGAAACTGTTAGCAGACACAAATTCATCGTCGTCGAGTTCTATGCTCCATGGTGTGGCCACTGCAAGAAACTTGCTCCAGAGTATGAGAAAGCTGCATCGATATTGAGTAGTCACGATCCTCCCATAATACTAGCAAAAGTTGATGCGAGTGATGAGAAAAACAAAGTTCTTGGGAAGGAATTTGAAATTAAGGGTTTCCCCACAATCAAGATCTTCAGAAATGGAGGGAAGAACATACAAGAATATAAAGGAACCCGTGATGCCAATGGTATTGTTGCTTATTTGAAGAAACAAAGTGGTCCTGCATCTTTTGAAATAAAATCCGTTGAAGATGCTAGTGGTCTTATTGATGACAATAAGATTGTTATAGTTGGGGTGTTCCCAGAGTTCTCAGGAGAGAAGTTTGAGACTTTCATAGCTCTAGCTGAGAAATTGCGTACAGAATACGAATTTCGTCATACTTCGGATGCGAAACTTTTACCTCGTGGTGACTCAGACATATCCGGGCCCACTGTTAGGTTGTTCAAGCCGTTTGATGAACTCGTCGTTGATTTCCAGGGTTTTAGTTTGGAAGCTTTAGAGAAGTTTGTGGAAGAAGCTGGTTCTCCCATTGTAACCTACTTTGACAAAGACCCTAGCAATCATCCCCATGTTATTAAATTCTTCAACATTCCCAACAACAAGGTGAAGAACACAACAGCAATTTTTGCCTTGTTATTTTTGAACTTCAGCAGTGCGGTTGTTGATTCTTTTAAACCAAAATATCATGATATTGCTAAGCAATACAAAGGGACCGGTATAAGTTTTTTGATGGGAGACGTTGAGGCTAGTCAAGGTGCTTTCCAGTATTATGGGCTGAAAGACAGCCAGGTTCCTCTCATCATCATACAGAACAAGGATGGACAGAAGTATCTCAAATCAAACCTGGAGCCTGATCATATTGCATCATGGGTGAAGGAGTACAAGGATGGCAATGTGGAACCCTACATAAAATCCGAACCTATACCCGAGGTCAACAATGAACCTGTCAAGGTGGTTGTCGCTGAGAGCTTCCAGGATATTGTTTTCAGCTCCGGGAAAAATGTTTTACTAGAGTTCTATGCTCCCTGGTGTGGACACTGCAAAAAATTGGCTCCAATATTGGATGAAGTTGCTGTTTCATTTGAAAATGATGCTGAAATTCTCATTGCAAAGATTGATGCTACTGCAAATGATATCCCAGCTGATATTTTTCCAGTCAGAGGTTATCCAACGTTGTACTTCAAGTCTGCGAGTGGAAATTTGTTGCAGTATCGTGGGAATAGGATGAAGGAAGATATCATTGACTTCATTCAGAATAATCGTGATAAAGCTGCCCAGCAAAGTTCTTTAAAAGATGAGCTCTGATAAAGGTAAATGATCTCTGCATCGAGCAATCTCATCTTCCAAGATGCAAAAAGGAACACAAGTTTTGCGGCCAACAAAACAAGGCCTGATTTTTCTCTCTGGGACTCTCACAATGTTTTTTTATTTAATTAATTCTTTTCTAATACCCTTAATTAAGTAAAGAGGTTCTTTTGAATCGCATAGACGCAGAAATCTTCATCAATTTTGGGGGTGGCAAAATTCACAATGTAAATTTTTTTTATGGCCGTTGAAAGTTTCTTATTTTCAAAATAATTTAGTTTAGAGAGCATTTCTGAAATTTCTAGATCAAGATATGGGATACTCCATGCATCTATATGTTAAACCAATTTACTTCATCAACCGCATTCCCCTGTAATTGCTATAATTAT

Network for GWHGAAZE024071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	34	140	6.40E-29
PF13848.7	Thioredoxin_6	171	363	1.90E-16
PF00085.21	Thioredoxin	386	488	7.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09580	PDIA1, P4HB	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0016853	molecular_function	isomerase activity
GO:0003756	molecular_function	protein disulfide isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.393
	SRR3591706	second leaf	0.111
	SRR3591707	mature leaf	0.062
	SRR3591708	Shoot apex	0.432
	SRR3591709	Stem	0.287
	SRR3591710	White floral bud	1.080
	SRR3591711	White flower	0.382
	SRR3591712	Green floral bud	8.810
	SRR3591713	Yellow flower	0.061
SRP173429	SRR8316895	Juvenile bud stage	15.535
	SRR8316896	Juvenile bud stage	40.573
	SRR8316897	Juvenile bud stage	16.121
	SRR8316894	Third green stage	10.417
	SRR8316900	Third green stage	22.928
	SRR8316901	Third green stage	26.799
	SRR8316898	Complete white stage	0.113
	SRR8316899	Complete white stage	0.736
	SRR8316903	Complete white stage	0.185
	SRR8316902	Silver flowering stage	0.019
	SRR8316904	Silver flowering stage	0.287
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.075
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	5.453
	SRR6706287	Light intensity 50%	5.362
	SRR6706288	Light intensity 20%	5.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.073
	CNS0095593	Slightly white alabastrum(diploid) 2	23.739
	CNS0095594	Slightly white alabastrum(diploid) 3	47.383
	CNS0095595	Whole white alabastrum(diploid) 2	26.734
	CNS0095596	Whole white alabastrum(diploid) 3	34.005
	CNS0095597	Whole white alabastrum(diploid) 4	27.717
	CNS0095598	Silvery flower (diploied) 1	0.199
	CNS0095599	Silvery flower (diploied) 2	0.999
	CNS0095600	Silvery flower (diploied) 3	0.453
	CNS0095601	Golden flower (diploid) 1	0.714
	CNS0095602	Golden flower (diploid) 2	0.212
	CNS0095603	Golden flower (diploid) 3	0.246
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.624
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.921
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.173
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.550
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.317
	CNS0095610	Silvery flower (tetraploid) 1	0.212
	CNS0095611	Silvery flower (tetraploid) 2	0.514
	CNS0095612	Silvery flower (tetraploid) 3	0.582
	CNS0095613	Golden flower (tetraploid) 1	0.077
	CNS0095614	Golden flower (tetraploid) 2	0.332
	CNS0095615	Golden flower (tetraploid) 3	0.448
CRA001975	CRR073297	Stem 1	10.127
	CRR073298	Stem 2	9.252
	CRR073299	Stem 3	8.016
	CRR073300	Leaf 1	6.936
	CRR073301	Leaf 2	7.711
	CRR073302	Leaf 3	6.040
	CRR073303	Juvenile bud 1	3.472
	CRR073304	Juvenile bud 2	4.463
	CRR073305	Juvenile bud 3	0.103
	CRR073306	Third green 1	0.901
	CRR073307	Third green 2	2.038
	CRR073308	Third green 3	0.492
	CRR073309	Second white 1	0.235
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.084
	CRR073312	Silver flowering 1	0.615
	CRR073313	Silver flowering 2	1.277
	CRR073314	Silver flowering 3	0.734
	CRR073315	Gold flowering 1	1.585
	CRR073316	Gold flowering 2	0.432
	CRR073317	Gold flowering 3	0.636
	CRR073318	Tawny withering 1	0.805
	CRR073319	Tawny withering 2	0.287
	CRR073320	Tawny withering 3	0.992