Gene detail

Detail information of GWHGAAZE024056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285853.1	0	PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera]
COG	YP_005846047.1	2E-73	Long-chain acyl-CoA synthetase
Swissprot	tr\|Q9CAP8\|LACS9_ARATH	0	Long chain acyl-CoA synthetase 9, chloroplastic
trEMBL	tr\|E0CR69\|E0CR69_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19023.3}
TAIR10	AT1G77590.1	0	long chain acyl-CoA synthetase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	34047369	34056553	+
GWHAAZE00000007	mRNA	34047369	34056553	+
GWHAAZE00000007	exon	34047369	34047815	+
GWHAAZE00000007	exon	34049332	34049601	+
GWHAAZE00000007	exon	34049959	34050090	+
GWHAAZE00000007	exon	34050843	34051016	+
GWHAAZE00000007	exon	34051125	34051354	+
GWHAAZE00000007	exon	34052723	34052840	+
GWHAAZE00000007	exon	34053632	34053763	+
GWHAAZE00000007	exon	34053868	34054002	+
GWHAAZE00000007	exon	34054721	34054927	+
GWHAAZE00000007	exon	34056425	34056553	+
GWHAAZE00000007	CDS	34047369	34047815	+
GWHAAZE00000007	CDS	34049332	34049601	+
GWHAAZE00000007	CDS	34049959	34050090	+
GWHAAZE00000007	CDS	34050843	34051016	+
GWHAAZE00000007	CDS	34051125	34051354	+
GWHAAZE00000007	CDS	34052723	34052840	+
GWHAAZE00000007	CDS	34053632	34053763	+
GWHAAZE00000007	CDS	34053868	34054002	+
GWHAAZE00000007	CDS	34054721	34054927	+
GWHAAZE00000007	CDS	34056425	34056553	+

Transcript Sequence
>GWHTAAZE024090 ATGGCTGCTTATTTTGTTGGCATCCTTGTTCCCCTTGTATTTACACTTTTCCTTCGGAATTCAAAGAAGAGAAAAAATAGAGGGTTGCTTGCTGATGTTGGTGGGGAACCTGGATATGCGATCCGAAACTATCGATTTACTTCCCCAGTGAAAACACATTGGGCAGAGATTACAACACTTGCAGAACTTTTTGAGCAATCATGCAAGCAGTACAAGGACAAAAAATTCCTTGGGACCCGGAAATTAATTTCTAGTGAGAAAGAAGTATCCTCAGATGGAAGGTCATTTGAGAAACTTCATTTGGGTGGCTATGGGTGGTTGAGCTATGGCAAAGTGTTTGAATCCGTGTGCAATTTTGCTTCGGGTTTAGCGCACCTCGGTCATAAAAGGGAAGAACGTGTTGCCATCTTTGCTGATACACGAGAAGAATGGTTTATTGCACTGCAGACAGAGGTTACAACTGTGATTTGCGGGAACAAAGAACTGAAGAAGCTTCTAGATATAAGTGGACAACTGGACACCGTAAAACGTGTAATATGTATGGATGATGCGATCCCATCAAATGCCTCATTGATTGAGGGAAGCAGTAGCTGGACCATCACTTCCTTTTCTGATGTAGAAAGATTTGGCCGAGAGAACCCTGTTGATGCAGATTTACCTCTTCCGGCTGATATTGCTGTGATTATGTATACAAGTGGGAGCACTGGTATGCCTAAGGGTGTAATGATGACACATGGAAATGTTCTAGCAACAATCTCCGCTGTCATGACAATTGTTCCTGGCCTTGGAAGCAAGGATGTTTATTTGGCCTATTTGCCCTTGGCACATATTCTTGAACTAGCAGCTGAGAATGTAATAGCCGCTGTTGGAAGTTCAATAGGATATGGATCCCCTTTGACTCTTACTGACACATCAAGCAAGATAAAGAGGGGGACAAAGGGGGATGCCTCTATGTTACAGCCGACATTAATGACAGCTGTCCCGGCAATTCTTGATCGTGTTCGAGATGGTGTGCGAAAGAAGGTAGATGCGACAGGTGGATTGTCAAAGAAATTATTTGATCTGGCATATGCTCGTCGATTATCTGCAATAAATGGAAGTTGGCTCGGGGCTTGGGGGATAGAGAAAATTTTGTGGAACCTTTTAGTGTTCAAAAAGGTCCGAGCTATTTTGGGCGGTCGAATCCGTTTTGTGCTCTCTGGAGGTGCCCCTCTATCTGGTGGTACTCAAAGATTCATCAACATTTGCCTCGGTGCTCCAATAGGTCAAGGGTATGGTCTCACGGAGACTTGTGCTGGTGGAACATTTTCTGAATATGATGATACATCTGTTGGTCGTGTTGGTGCTCCGTTACCTTGCTCCTTTATCAAGTTGATAGATTGGGCCGAGGGCGGTTATCTAATAACTGATTCTCCTATGCCTCGCGGAGAAATAGTTGTTGGCGGCCCAAATGTAACCGTTGGATATTTTAATAACGAGGAGAAAACAAGGGAAGTCTACAAGGTTGATGAGAGAGGAATGAGGTGGTTCTATACAGGCGACATAGGGCGGTTTCATGCTGATGGTTGCCTTGAGATAATTGACCGTAAAAAGGACATAGTTAAACTTCAGCATGGAGAATATGTATCTCTAGGAAAGGTTGAGGCTGCTCTCATTGTAAGTCCATACGCAGACAATATTATGATGCACGCTGATCCTTTCAATAGTTTTTGTGTGGCTCTTGTGGTGGCTTCACAGCCAGCATTGGAAGATTGGGCTTCGAAGAATGGTATCAGTTATGACGGTTTTTCAGACTTATGCCAAAAAGACGAAACCATGAAGGAAGTGCACAGTTCTCTTGTAAAGGCAGGAAAAGCGGCACGCCTAGAGAAATTCGAGATCCCAGCAAAGATCAAACTTCTTTGGGAAGCATGGACTCCCGAATCTGGCCTTGTCACTGCCAGCTCTCAAGATCAAGAGGGAGTCGATTCGTAA

Network for GWHGAAZE024056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	146	537	2.10E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.459
	SRR3591706	second leaf	54.661
	SRR3591707	mature leaf	37.088
	SRR3591708	Shoot apex	31.336
	SRR3591709	Stem	9.217
	SRR3591710	White floral bud	13.799
	SRR3591711	White flower	10.227
	SRR3591712	Green floral bud	14.757
	SRR3591713	Yellow flower	4.873
SRP173429	SRR8316895	Juvenile bud stage	14.440
	SRR8316896	Juvenile bud stage	19.746
	SRR8316897	Juvenile bud stage	7.912
	SRR8316894	Third green stage	6.939
	SRR8316900	Third green stage	20.272
	SRR8316901	Third green stage	16.341
	SRR8316898	Complete white stage	6.368
	SRR8316899	Complete white stage	12.459
	SRR8316903	Complete white stage	8.247
	SRR8316902	Silver flowering stage	7.368
	SRR8316904	Silver flowering stage	9.767
	SRR8316905	Silver flowering stage	4.639
	SRR8316906	Gold flowering stage	15.627
	SRR8316907	Gold flowering stage	16.375
	SRR8316908	Gold flowering stage	14.411
SRP132670	SRR6706286	Control	12.617
	SRR6706287	Light intensity 50%	15.485
	SRR6706288	Light intensity 20%	18.807
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.728
	CNS0095593	Slightly white alabastrum(diploid) 2	6.919
	CNS0095594	Slightly white alabastrum(diploid) 3	10.534
	CNS0095595	Whole white alabastrum(diploid) 2	7.660
	CNS0095596	Whole white alabastrum(diploid) 3	7.506
	CNS0095597	Whole white alabastrum(diploid) 4	3.759
	CNS0095598	Silvery flower (diploied) 1	5.961
	CNS0095599	Silvery flower (diploied) 2	7.051
	CNS0095600	Silvery flower (diploied) 3	8.446
	CNS0095601	Golden flower (diploid) 1	4.276
	CNS0095602	Golden flower (diploid) 2	4.821
	CNS0095603	Golden flower (diploid) 3	6.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.766
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.168
	CNS0095610	Silvery flower (tetraploid) 1	9.920
	CNS0095611	Silvery flower (tetraploid) 2	10.116
	CNS0095612	Silvery flower (tetraploid) 3	10.922
	CNS0095613	Golden flower (tetraploid) 1	2.372
	CNS0095614	Golden flower (tetraploid) 2	10.858
	CNS0095615	Golden flower (tetraploid) 3	3.250
CRA001975	CRR073297	Stem 1	15.722
	CRR073298	Stem 2	16.103
	CRR073299	Stem 3	14.559
	CRR073300	Leaf 1	17.478
	CRR073301	Leaf 2	15.308
	CRR073302	Leaf 3	17.815
	CRR073303	Juvenile bud 1	15.512
	CRR073304	Juvenile bud 2	11.572
	CRR073305	Juvenile bud 3	14.738
	CRR073306	Third green 1	11.073
	CRR073307	Third green 2	5.532
	CRR073308	Third green 3	8.570
	CRR073309	Second white 1	8.981
	CRR073310	Second white 2	8.801
	CRR073311	Second white 3	8.608
	CRR073312	Silver flowering 1	7.244
	CRR073313	Silver flowering 2	7.703
	CRR073314	Silver flowering 3	8.308
	CRR073315	Gold flowering 1	9.380
	CRR073316	Gold flowering 2	18.219
	CRR073317	Gold flowering 3	14.850
	CRR073318	Tawny withering 1	17.470
	CRR073319	Tawny withering 2	10.098
	CRR073320	Tawny withering 3	17.097