Gene detail

Detail information of GWHGAAZE023843

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011019500.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q39247\|2ABB_ARATH	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
trEMBL	tr\|B9HDP4\|B9HDP4_POPTR	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256\|RuleBase:RU331113}
TAIR10	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27955180	27966332	+
GWHAAZE00000007	mRNA	27955180	27966332	+
GWHAAZE00000007	exon	27955180	27955359	+
GWHAAZE00000007	exon	27955617	27955715	+
GWHAAZE00000007	exon	27958958	27959164	+
GWHAAZE00000007	exon	27959434	27959525	+
GWHAAZE00000007	exon	27961617	27961735	+
GWHAAZE00000007	exon	27962897	27963020	+
GWHAAZE00000007	exon	27963143	27963266	+
GWHAAZE00000007	exon	27963992	27964060	+
GWHAAZE00000007	exon	27964178	27964269	+
GWHAAZE00000007	exon	27964741	27964818	+
GWHAAZE00000007	exon	27965277	27965344	+
GWHAAZE00000007	exon	27966196	27966332	+
GWHAAZE00000007	CDS	27955180	27955359	+
GWHAAZE00000007	CDS	27955617	27955715	+
GWHAAZE00000007	CDS	27958958	27959164	+
GWHAAZE00000007	CDS	27959434	27959525	+
GWHAAZE00000007	CDS	27961617	27961735	+
GWHAAZE00000007	CDS	27962897	27963020	+
GWHAAZE00000007	CDS	27963143	27963266	+
GWHAAZE00000007	CDS	27963992	27964060	+
GWHAAZE00000007	CDS	27964178	27964269	+
GWHAAZE00000007	CDS	27964741	27964818	+
GWHAAZE00000007	CDS	27965277	27965344	+
GWHAAZE00000007	CDS	27966196	27966332	+

Transcript Sequence
>GWHTAAZE023873 ACTTGCAATAAACACTGTTGTGCACCCCTTGAGTTTGCTTCCTATTACTTGAACTGCTCATTTTTCTGTTCTGCAGTTGATATTATTTCAGCCATCGAATTTGACAAAACTGGGGACCATCTGGCCACTGGAGATCGTGGGGGTCGGGTTGTTTTATTTGAAAGAACTGATAAAAGAGATCATGCTGGTCATCGAAGAGATCTAGAGAGGATGGATTGTTCGAGCAATCGGCAGCCTGAGTTCCGTTATAAAACTGAATTTCAGAGCCATGAACCAGAGGTCCAAGAGAAGAAGGTCAAGAAAGTATGTGAAATGAATGTGGACCATCCAAAATCTTTCGGAAACGGCACAATTGGTGGTTCAAGTGTATCGGCAAACTCCAAAAGGCATGTTGTAAATGGAGGATGCATCGACAAACCTTTCAATTATTCAAGCAATGAACTTCAATCTCCACCAGGGGGAATTTCATCCATACGTTTACCCGTGGTAACAAGTCTAGAGACAAGCCTTGTGGCTAGATGTCGAAGAATTTACGCTCATGCCCATGACTATCATATTAATTCTATCTCGAATAACAGTGACGGTGAAACTTTTATATCTGCTGATGATCTGCGAATAAATCTTTGGAACTTGGATATTAGCAATCAAAGTTTCAATATCGTTGATGTGAAGCCTACAAACATGGAGGATCTGACTGAGGTGATAACTTCGGCGGAATTTCACCCTTCACATTGTAATATGTTGGCATATAGTAGCTCAAAAGGATTAATCAGGCTTCTTGATTTGCGGCAATCAGCTTTGTGTGATACCCACAGTAAATTGTTTGAAGAACATGAGGCTCCTGGTTCCAGATCTTTTTTCACAGATATAATTGCATCAATTTCAGATATTAAATTTTCCAAGGATGGAAGGCATATACTAAGTCGTGATTATATGACACTTAAGCTGTGGGACATAAATATGGATTCTGGGCCAGTTGCAACTTTCCAGGTTCATGACTATTTGAGACCTAAGTTGTGTGATTTATATGAAAATGATTCTATCTTCGACAAGTTCGAGTGTTGTCTGAGTGGAGATGGACTTCGGGTGGCCACCGGTTCCTATAGCAATCTGTTTCGCGTGTTTGGTTGCTCTGAGGGCAGCACAGAAGCAACAACATTGGAAGCCACCAAAAACCCCACGAGGCGACAAGTGCAAACCCCATCCAAGCCTTCAAGATCCCTTGTATCTCTTCCTCGTGTTGTCAGGCGAGGCGCAGATAACTCTGGAGCTGAAACAAACGGAAATTCATTTGATTTCACAACAAAGTTGCTCCATCTGGCGTGGCACCCGACCGAGAACTCAATCGCGTGTGCTGCTTCAAACAGCTTGTACATGTACTACGCGTGA

Network for GWHGAAZE023843

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	174	210	0.12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04354	PPP2R2	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0005515	molecular_function	protein binding
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.724
	SRR3591706	second leaf	32.428
	SRR3591707	mature leaf	34.626
	SRR3591708	Shoot apex	40.730
	SRR3591709	Stem	62.965
	SRR3591710	White floral bud	57.100
	SRR3591711	White flower	63.483
	SRR3591712	Green floral bud	52.465
	SRR3591713	Yellow flower	52.696
SRP173429	SRR8316895	Juvenile bud stage	22.041
	SRR8316896	Juvenile bud stage	29.043
	SRR8316897	Juvenile bud stage	12.357
	SRR8316894	Third green stage	15.361
	SRR8316900	Third green stage	43.822
	SRR8316901	Third green stage	37.457
	SRR8316898	Complete white stage	25.002
	SRR8316899	Complete white stage	60.545
	SRR8316903	Complete white stage	38.129
	SRR8316902	Silver flowering stage	25.625
	SRR8316904	Silver flowering stage	41.120
	SRR8316905	Silver flowering stage	17.410
	SRR8316906	Gold flowering stage	47.696
	SRR8316907	Gold flowering stage	47.102
	SRR8316908	Gold flowering stage	42.607
SRP132670	SRR6706286	Control	28.484
	SRR6706287	Light intensity 50%	27.910
	SRR6706288	Light intensity 20%	30.239
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.972
	CNS0095593	Slightly white alabastrum(diploid) 2	25.588
	CNS0095594	Slightly white alabastrum(diploid) 3	18.573
	CNS0095595	Whole white alabastrum(diploid) 2	22.736
	CNS0095596	Whole white alabastrum(diploid) 3	22.635
	CNS0095597	Whole white alabastrum(diploid) 4	20.810
	CNS0095598	Silvery flower (diploied) 1	28.092
	CNS0095599	Silvery flower (diploied) 2	24.778
	CNS0095600	Silvery flower (diploied) 3	45.630
	CNS0095601	Golden flower (diploid) 1	26.129
	CNS0095602	Golden flower (diploid) 2	41.963
	CNS0095603	Golden flower (diploid) 3	39.538
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.042
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.962
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.776
	CNS0095610	Silvery flower (tetraploid) 1	56.761
	CNS0095611	Silvery flower (tetraploid) 2	43.941
	CNS0095612	Silvery flower (tetraploid) 3	45.794
	CNS0095613	Golden flower (tetraploid) 1	26.412
	CNS0095614	Golden flower (tetraploid) 2	45.382
	CNS0095615	Golden flower (tetraploid) 3	42.637
CRA001975	CRR073297	Stem 1	27.038
	CRR073298	Stem 2	23.645
	CRR073299	Stem 3	22.290
	CRR073300	Leaf 1	34.422
	CRR073301	Leaf 2	29.616
	CRR073302	Leaf 3	23.622
	CRR073303	Juvenile bud 1	30.159
	CRR073304	Juvenile bud 2	21.300
	CRR073305	Juvenile bud 3	22.957
	CRR073306	Third green 1	18.467
	CRR073307	Third green 2	17.094
	CRR073308	Third green 3	19.968
	CRR073309	Second white 1	14.302
	CRR073310	Second white 2	16.770
	CRR073311	Second white 3	14.685
	CRR073312	Silver flowering 1	12.621
	CRR073313	Silver flowering 2	7.995
	CRR073314	Silver flowering 3	14.373
	CRR073315	Gold flowering 1	12.304
	CRR073316	Gold flowering 2	20.521
	CRR073317	Gold flowering 3	9.057
	CRR073318	Tawny withering 1	35.441
	CRR073319	Tawny withering 2	29.358
	CRR073320	Tawny withering 3	31.216