Gene detail

Detail information of GWHGAAZE023832

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648359.1	0	PREDICTED: serine/threonine-protein kinase EDR1 [Vitis vinifera]
COG	YP_001958461.1	2E-45	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	1E-124	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6H3P3\|F6H3P3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46576.1}
TAIR10	AT5G11850.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27550826	27586695	+
GWHAAZE00000007	mRNA	27550826	27586695	+
GWHAAZE00000007	exon	27550826	27551305	+
GWHAAZE00000007	exon	27552893	27553333	+
GWHAAZE00000007	exon	27553730	27553822	+
GWHAAZE00000007	exon	27554178	27554281	+
GWHAAZE00000007	exon	27555008	27556071	+
GWHAAZE00000007	exon	27558237	27558277	+
GWHAAZE00000007	exon	27559272	27559340	+
GWHAAZE00000007	exon	27559446	27559546	+
GWHAAZE00000007	exon	27560606	27560684	+
GWHAAZE00000007	exon	27560777	27560875	+
GWHAAZE00000007	exon	27561014	27561082	+
GWHAAZE00000007	exon	27561533	27561582	+
GWHAAZE00000007	exon	27561680	27561856	+
GWHAAZE00000007	exon	27576285	27576616	+
GWHAAZE00000007	exon	27576736	27576764	+
GWHAAZE00000007	exon	27579562	27579618	+
GWHAAZE00000007	exon	27585848	27585892	+
GWHAAZE00000007	exon	27586477	27586695	+
GWHAAZE00000007	five_prime_UTR	27550826	27550906	+
GWHAAZE00000007	CDS	27550907	27551305	+
GWHAAZE00000007	CDS	27552893	27553333	+
GWHAAZE00000007	CDS	27553730	27553822	+
GWHAAZE00000007	CDS	27554178	27554281	+
GWHAAZE00000007	CDS	27555008	27556071	+
GWHAAZE00000007	CDS	27558237	27558277	+
GWHAAZE00000007	CDS	27559272	27559340	+
GWHAAZE00000007	CDS	27559446	27559546	+
GWHAAZE00000007	CDS	27560606	27560684	+
GWHAAZE00000007	CDS	27560777	27560875	+
GWHAAZE00000007	CDS	27561014	27561082	+
GWHAAZE00000007	CDS	27561533	27561582	+
GWHAAZE00000007	CDS	27561680	27561856	+
GWHAAZE00000007	CDS	27576285	27576616	+
GWHAAZE00000007	CDS	27576736	27576764	+
GWHAAZE00000007	CDS	27579562	27579618	+
GWHAAZE00000007	CDS	27585848	27585892	+
GWHAAZE00000007	CDS	27586477	27586695	+

Transcript Sequence
>GWHTAAZE023862 GAGAAATTAATTATTGATACGAAGAAATATTCTAGAGAGCGAGAAAAAAATCAGATTATTTGTCTAAATCATCGATGCGACATGTCGAAAATGAAGCATCTACTCCGAAAGCTGCATATCGGCGGTGGAGGGGGTGGTGGCGGAGCCTTCAACGATCATCATCAATCTCAGCCGTTGATCAGTCCACCTGGACCACCGCCACCGCCGCTACCGATTATTGAGTCCTCGACTTCTTCGTCTTCATCCTCGGGTGCAACTAGGGCTACTCCTATTGATTCATCGTCGGGGGAGAATAACAATTGCGTGGATTTCAATTTTTTCGAGGAGGAATTTCAGATGCAGCTTGCTTTGGCGATCAGCGTATCGGATCCCGAGGGGAGGGAGGATCCGGAATCTGCGCAGATCAAGGCTGCTAAGCAGAGAAGCTTGGGGCGTTCTCCTACTGAAACCCTAGTTGAGTTCCTTTCGCTTCGGTATTGGAGTAATAATGTTGTAAATTATGAGGAGAAAGTAATGGATGGGTTTTATGATGTATATGGGATTTCTTCAAATTCGGTAACGCAAGGAAAAATGCCTCTATTAGTGGATCTTCAAGCAGTTTCTGTTTTGGATAATGTTGATTGTGAAGTCATTTTAGTGGACCGCACAGCTGATTTGGAACTGCTACAGCTTGAGGAAAGAGTATATAATATATCATTGGAATGCCAGGCTTTTGGGGAGGGCTGGACTGTGAGTAGTTTGATACAGAAAATTGCAGGTCTAGTTGTTGATAAAATGGGTGGTCCTGTTACCGATGCAGATGAAATGTTGAAAAAGTGGACTGCAAGGAGCTATGAATTACGAAGTTCTCTGAACACTATCATCCTTCCCCTTGGTGGTCTCGATGTTGGACTGTCACGGCATAGGGCTTTGCTCTTTAAGGGAGACTCTTATCCTTTAGGATCCTCTTCAGAGCCTGGGCGTAACCTAGATATTTATGAGACTCTTTATGTTAAGGAGCAAAGCTATGATAAGGTACTTGCTGATAGGATCAACCTCCCATGTATGCTGGTCAAAGGGAGCTACTATACCGGCACTGACGAGGGAGCTGTGAACTTGATTAAAGTTGAAACCGGAAATGAGTACATTATTGATCTAATGGGTGCTCCGGGCACACTAATTCCTGCTGAGGCACCCGGTTCTAATCTTCAAAACTTCGGTTTAGATACAAGGAGTGTTGCAGAGCTTGCCGAAAATTTCAAATGTTCAGGTTCCATGTTTGAAAAGGGATCCGAACCAATAGTGGCTGGTTCTACAGATCTTGATGGAGTTGCCAAATTTGGTAATTTGAGTCCAGAAATAGCATCTCTTGTAGGCACCCCTTCGAAAGGGACCAATGGGAAATTCGTGGAGAAAAATCAAACTGAGAGATTTGAGCATGACTTTGGAAAGCTTCTTCCATCACTATGTAGATCACAAGAAGGGTCCCCGGGCGCTGTGGGGAAAGCATCAGCTGCGCAAAAGTTGCAGGTTAAAGATGTTTCCAAATATGTAATCAGTGCTGCAAAAAACCCCGAATTTGCTTCGAAACTTCATGCTGTTTTGTTAGAAAATGGTGCATCATCACCTCTAGATTTTCTTTCGGATTTGAATCCCCAATTGCTTGAGAATGTTAATTTATGGAATGGGGAAAGAGTCGATGGTGAGGTTCAATGTGAACCGTTGATCTGTTTGTCTAACAATGAGCAGTCTATTATACCCTTTACTGGATTGATGTCATCGAACAATGCTGCTGAGGTTTCAAACGAACGACAGCAGGAAGCGGAGTTCGATATTGTGAGCAGTGGGAACTCTTTACCATCTGTTACTACAAGCGAGGGCTTTGTGCTTGTTTGTAGTGGAACTAATGAAGCCAAGCAGACCAATGATGTGGGTGGTTGTGGCATTCTTGTTGATCAGTCTAAAGTGGTTCCGAGAACATTAGATTCGGAGCTAATTCCTTTCAAAGGACAATCTTCAAATTCCCTTGCTGGTGATGGTGGGCGATGCTTTAAGGATAAAACGGGAAAGGTTTTCAATAACATTGAAAAGGACAAAGATACAGATATTGGTCAAAATGAGAGGATTAGTCCAATGATGGGTGAGGTTGCAGAATGGGAAATTCCATGGGAGGATCTTCAGATTGGAGAACGCATTGGCATCGGCTCGTTTGGGGAGGTCTATCGTGCAGAATGGAATGGCACTGAAGTTGCTGTGAAGAAATTCATGAACCAAGACATCTCTGGTGACGCATTGGTTCAGTTTAAATGTGAGATTGAAATCATGTTACGGTTGAGACATCCTAACGTTGTTCTTTTCATGGGAGCAGTTACTCATCCTCCAAATCTCTCTATATTGACAGAGTTTCTACCAAGGGGGAGTTTATTTAAGCTGTTGCATCGTCCAAATCTCCAACTTGATGAAAAGAGGCGAATGCGGATGGCTCTTGATGTAGCCAAGGGAATGAATTACTTGCACACAAGCAATCCTATTATTGTGCATCGGGATTTGAAGACTCCAAATCTCCTTGTTGATAAGAACTGGGTTGTTAAGGTATGTGATTTTGGGATGTCACGTATGAAGCACAACACTTTTCTCTCTTCAACGTCCACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTATTGAGGAATGAACGATCTAATGAGAAGGCTGATGTGTACAGCTTTGGTGTAATATTGTGGGAGTTGGCAACTTTGCGGGTGCCGTGGAGTGAGATGAACTCAATGCAGGTTGTAGGAGCTGTTGGATTTCAACACAGACACCTTGATATTCCAGATGACCTTGACCCAATGGTTGCTCAGATAATAATTGATTGTTGGGATCCTTACAACACGTCACCAGAAACCGACTGCCCTGTCCCCCTAGATCAGCAGCCTGTCAACGAGTACCAGTCCCTCTCCACCTCTTCCCCCTTTTCTTGGGCCTCCGAAGAATTATCCGGCTACTGTTACCGGCTGCTGGTCACCGGAGCTTCTTTTGCTCTCTTCGTGGGTCTGCCCGTTTCTTGGTACGGGTCAGTGGGGGTAGATCTGGACCCGGTTCAGAGGGTGTTGGGTTCTGTTTCTAGTGGGGTGTTTGTGGTGATTCTTGCTGTTGTGAGGATGTATTTGGGTTGGGCTTATGTTGGCAATCGATTACTCAGTGCCACTGTTGAATATGAAGAGACAGGATGGTATGATGGTCAGATATGGGTGAAAACTCCTGAAGTTCTTGCACGTGACCGGCTTTTAGGTTCATTTTCTTGGGATGGTTTTGTGGATGATCTGGTAATGGTGGATTGGCAGTGGGTCAAACCCGTGCTTGGCCGATTAAAGAACACTCTGGTCAGCCTCGGGTTGTCTTTATTTGTGTGTATCGTACTCCTTGTGAATACCGAAGGCAGCCAAAAAGTAGGCTACGTTTCGTCTGGAGAAGATGGTGGTAGAGTCGTACACGGAGTTTACAACGACGAATCTGCAAGATCATTTGAGCCAGAAGCATTTTGCGGTGAACCTGGTCCTCCTTAG

Network for GWHGAAZE023832

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	126	280	7.10E-49
PF14381.7	EDR1	311	360	6.50E-17
PF07714.18	PK_Tyr_Ser-Thr	692	929	1.20E-59
PF06799.12	DUF1230	938	1068	3.60E-47

Protein Sequence

>GWHPAAZE023848
MSKMKHLLRKLHIGGGGGGGGAFNDHHQSQPLISPPGPPPPPLPIIESSTSSSSSSGATRATPIDSSSGENNNCVDFNFFEEEFQMQLALAISVSDPEGREDPESAQIKAAKQRSLGRSPTETLVEFLSLRYWSNNVVNYEEKVMDGFYDVYGISSNSVTQGKMPLLVDLQAVSVLDNVDCEVILVDRTADLELLQLEERVYNISLECQAFGEGWTVSSLIQKIAGLVVDKMGGPVTDADEMLKKWTARSYELRSSLNTIILPLGGLDVGLSRHRALLFKGDSYPLGSSSEPGRNLDIYETLYVKEQSYDKVLADRINLPCMLVKGSYYTGTDEGAVNLIKVETGNEYIIDLMGAPGTLIPAEAPGSNLQNFGLDTRSVAELAENFKCSGSMFEKGSEPIVAGSTDLDGVAKFGNLSPEIASLVGTPSKGTNGKFVEKNQTERFEHDFGKLLPSLCRSQEGSPGAVGKASAAQKLQVKDVSKYVISAAKNPEFASKLHAVLLENGASSPLDFLSDLNPQLLENVNLWNGERVDGEVQCEPLICLSNNEQSIIPFTGLMSSNNAAEVSNERQQEAEFDIVSSGNSLPSVTTSEGFVLVCSGTNEAKQTNDVGGCGILVDQSKVVPRTLDSELIPFKGQSSNSLAGDGGRCFKDKTGKVFNNIEKDKDTDIGQNERISPMMGEVAEWEIPWEDLQIGERIGIGSFGEVYRAEWNGTEVAVKKFMNQDISGDALVQFKCEIEIMLRLRHPNVVLFMGAVTHPPNLSILTEFLPRGSLFKLLHRPNLQLDEKRRMRMALDVAKGMNYLHTSNPIIVHRDLKTPNLLVDKNWVVKVCDFGMSRMKHNTFLSSTSTAGTPEWMAPEVLRNERSNEKADVYSFGVILWELATLRVPWSEMNSMQVVGAVGFQHRHLDIPDDLDPMVAQIIIDCWDPYNTSPETDCPVPLDQQPVNEYQSLSTSSPFSWASEELSGYCYRLLVTGASFALFVGLPVSWYGSVGVDLDPVQRVLGSVSSGVFVVILAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTPEVLARDRLLGSFSWDGFVDDLVMVDWQWVKPVLGRLKNTLVSLGLSLFVCIVLLVNTEGSQKVGYVSSGEDGGRVVHGVYNDESARSFEPEAFCGEPGPP

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
K04424	ZAK, MLTK	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.988
	SRR3591706	second leaf	6.146
	SRR3591707	mature leaf	15.569
	SRR3591708	Shoot apex	4.175
	SRR3591709	Stem	9.564
	SRR3591710	White floral bud	13.527
	SRR3591711	White flower	16.481
	SRR3591712	Green floral bud	9.259
	SRR3591713	Yellow flower	15.740
SRP173429	SRR8316895	Juvenile bud stage	4.023
	SRR8316896	Juvenile bud stage	6.038
	SRR8316897	Juvenile bud stage	0.619
	SRR8316894	Third green stage	3.278
	SRR8316900	Third green stage	9.078
	SRR8316901	Third green stage	8.650
	SRR8316898	Complete white stage	6.665
	SRR8316899	Complete white stage	13.563
	SRR8316903	Complete white stage	11.607
	SRR8316902	Silver flowering stage	7.592
	SRR8316904	Silver flowering stage	13.028
	SRR8316905	Silver flowering stage	5.962
	SRR8316906	Gold flowering stage	17.946
	SRR8316907	Gold flowering stage	17.338
	SRR8316908	Gold flowering stage	9.413
SRP132670	SRR6706286	Control	9.054
	SRR6706287	Light intensity 50%	9.267
	SRR6706288	Light intensity 20%	10.047
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.610
	CNS0095593	Slightly white alabastrum(diploid) 2	3.492
	CNS0095594	Slightly white alabastrum(diploid) 3	3.675
	CNS0095595	Whole white alabastrum(diploid) 2	3.860
	CNS0095596	Whole white alabastrum(diploid) 3	3.707
	CNS0095597	Whole white alabastrum(diploid) 4	4.286
	CNS0095598	Silvery flower (diploied) 1	9.290
	CNS0095599	Silvery flower (diploied) 2	6.648
	CNS0095600	Silvery flower (diploied) 3	20.153
	CNS0095601	Golden flower (diploid) 1	6.792
	CNS0095602	Golden flower (diploid) 2	19.276
	CNS0095603	Golden flower (diploid) 3	18.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.879
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.821
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.802
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.962
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.006
	CNS0095610	Silvery flower (tetraploid) 1	18.293
	CNS0095611	Silvery flower (tetraploid) 2	19.747
	CNS0095612	Silvery flower (tetraploid) 3	17.965
	CNS0095613	Golden flower (tetraploid) 1	13.209
	CNS0095614	Golden flower (tetraploid) 2	18.711
	CNS0095615	Golden flower (tetraploid) 3	18.618
CRA001975	CRR073297	Stem 1	9.845
	CRR073298	Stem 2	9.681
	CRR073299	Stem 3	8.194
	CRR073300	Leaf 1	12.521
	CRR073301	Leaf 2	9.739
	CRR073302	Leaf 3	9.110
	CRR073303	Juvenile bud 1	10.769
	CRR073304	Juvenile bud 2	10.468
	CRR073305	Juvenile bud 3	10.617
	CRR073306	Third green 1	10.975
	CRR073307	Third green 2	7.093
	CRR073308	Third green 3	10.970
	CRR073309	Second white 1	11.678
	CRR073310	Second white 2	14.558
	CRR073311	Second white 3	16.109
	CRR073312	Silver flowering 1	12.676
	CRR073313	Silver flowering 2	9.850
	CRR073314	Silver flowering 3	11.494
	CRR073315	Gold flowering 1	13.418
	CRR073316	Gold flowering 2	19.132
	CRR073317	Gold flowering 3	16.326
	CRR073318	Tawny withering 1	7.644
	CRR073319	Tawny withering 2	6.918
	CRR073320	Tawny withering 3	7.226