Gene detail

Detail information of GWHGAAZE023820

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008220472.1	5.5493E-138	PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Prunus mume]
COG	YP_001520211.1	7E-86	glycine dehydrogenase
Swissprot	tr\|P26969\|GCSP_PEA	4E-135	Glycine dehydrogenase (decarboxylating), mitochondrial (Precursor)
trEMBL	tr\|M5Y8B9\|M5Y8B9_PRUPE	8E-137	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28260.1}
TAIR10	AT2G26080.1	1E-110	glycine decarboxylase P-protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	27181882	27184645	+
GWHAAZE00000007	mRNA	27181882	27184645	+
GWHAAZE00000007	exon	27181882	27181893	+
GWHAAZE00000007	exon	27182292	27182480	+
GWHAAZE00000007	exon	27183083	27183160	+
GWHAAZE00000007	exon	27183252	27183332	+
GWHAAZE00000007	exon	27183467	27183565	+
GWHAAZE00000007	exon	27183691	27183808	+
GWHAAZE00000007	exon	27184551	27184645	+
GWHAAZE00000007	CDS	27181882	27181893	+
GWHAAZE00000007	CDS	27182292	27182480	+
GWHAAZE00000007	CDS	27183083	27183160	+
GWHAAZE00000007	CDS	27183252	27183332	+
GWHAAZE00000007	CDS	27183467	27183565	+
GWHAAZE00000007	CDS	27183691	27183808	+
GWHAAZE00000007	CDS	27184551	27184645	+

Transcript Sequence
>GWHTAAZE023850 ATGATGATGCAGATCTCTACAGGAGGTATACCGGCCCCGGAGAAAGCTCAGCCACTTGGGACTATTTCAGCAGCACCTTGGGGTTCTGCCCTCATTTTGCCAATTTCATACACCTACATTGCCATGATGGGGTCCGAGGGACTTACAGACGCGTCAAAGATAGCCATCTTGAATGCAAACTACATGGCTAAACGTTTGGAGAACCACTACCCTATTCTTTTCCGTGGTGTCAATGGAACGGTTGCCCATGAATTTATTGTTGATCTGAGGGGCTTCAAGCATACGGCTGGAATAGAGCCAGAAGACGTGGCTAAACGCCTTATGGACTACGGATTTCATGGACCAACAATGTCATGGCCCGCGGAGTTAGACAGGTTTTGTGATGCACTTATCTCCATTAGGGAAGAAATTGCACTGATTGAGAAAGGAAAAGCTGATATTCACAACAATATTCTCAAGGGAGCACCGCATCCACCCTCGCTACTCATGGCAGACAAATGGAGCAAACCTTACTCTCGGGAAGATGCAGCCTACCCCGCTTCTTGGCTCCGCTCTGCCAAGTTCTGGCCAACCACTGGGCGTGTGGATAATGTGTATGGTGATCGCAACCTTGTCTGCACCCTTCAGCCAGCAACACAGGTTGTGGAAGAACAAGCAGCAGCTACTGCTTAA

Network for GWHGAAZE023820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00281	GLDC, gcvP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	190.729
	SRR3591706	second leaf	800.059
	SRR3591707	mature leaf	1605.188
	SRR3591708	Shoot apex	364.188
	SRR3591709	Stem	633.459
	SRR3591710	White floral bud	71.809
	SRR3591711	White flower	83.537
	SRR3591712	Green floral bud	94.832
	SRR3591713	Yellow flower	60.392
SRP173429	SRR8316895	Juvenile bud stage	123.140
	SRR8316896	Juvenile bud stage	133.787
	SRR8316897	Juvenile bud stage	85.426
	SRR8316894	Third green stage	39.111
	SRR8316900	Third green stage	89.332
	SRR8316901	Third green stage	99.160
	SRR8316898	Complete white stage	12.011
	SRR8316899	Complete white stage	45.843
	SRR8316903	Complete white stage	23.197
	SRR8316902	Silver flowering stage	25.758
	SRR8316904	Silver flowering stage	27.454
	SRR8316905	Silver flowering stage	16.381
	SRR8316906	Gold flowering stage	77.593
	SRR8316907	Gold flowering stage	67.217
	SRR8316908	Gold flowering stage	126.119
SRP132670	SRR6706286	Control	61.590
	SRR6706287	Light intensity 50%	56.676
	SRR6706288	Light intensity 20%	58.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	110.611
	CNS0095593	Slightly white alabastrum(diploid) 2	98.852
	CNS0095594	Slightly white alabastrum(diploid) 3	109.148
	CNS0095595	Whole white alabastrum(diploid) 2	86.272
	CNS0095596	Whole white alabastrum(diploid) 3	98.042
	CNS0095597	Whole white alabastrum(diploid) 4	81.908
	CNS0095598	Silvery flower (diploied) 1	100.703
	CNS0095599	Silvery flower (diploied) 2	87.138
	CNS0095600	Silvery flower (diploied) 3	59.151
	CNS0095601	Golden flower (diploid) 1	113.679
	CNS0095602	Golden flower (diploid) 2	82.110
	CNS0095603	Golden flower (diploid) 3	75.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	125.514
	CNS0095605	Slightly white alabastrum(tetraploid) 2	121.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	154.929
	CNS0095607	Whole white alabastrum(tetraploid) 1	109.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	84.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	111.963
	CNS0095610	Silvery flower (tetraploid) 1	105.250
	CNS0095611	Silvery flower (tetraploid) 2	111.024
	CNS0095612	Silvery flower (tetraploid) 3	107.052
	CNS0095613	Golden flower (tetraploid) 1	66.160
	CNS0095614	Golden flower (tetraploid) 2	107.074
	CNS0095615	Golden flower (tetraploid) 3	155.867
CRA001975	CRR073297	Stem 1	186.898
	CRR073298	Stem 2	144.120
	CRR073299	Stem 3	195.974
	CRR073300	Leaf 1	92.764
	CRR073301	Leaf 2	97.162
	CRR073302	Leaf 3	70.551
	CRR073303	Juvenile bud 1	62.891
	CRR073304	Juvenile bud 2	64.121
	CRR073305	Juvenile bud 3	76.707
	CRR073306	Third green 1	35.683
	CRR073307	Third green 2	34.235
	CRR073308	Third green 3	36.069
	CRR073309	Second white 1	54.422
	CRR073310	Second white 2	34.016
	CRR073311	Second white 3	40.062
	CRR073312	Silver flowering 1	58.016
	CRR073313	Silver flowering 2	72.485
	CRR073314	Silver flowering 3	50.167
	CRR073315	Gold flowering 1	982.556
	CRR073316	Gold flowering 2	1234.844
	CRR073317	Gold flowering 3	1189.871
	CRR073318	Tawny withering 1	156.599
	CRR073319	Tawny withering 2	151.688
	CRR073320	Tawny withering 3	136.466