Gene detail

Detail information of GWHGAAZE023804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007012303.1	4.6366E-172	Mitochondrial substrate carrier family protein [Theobroma cacao]
Swissprot	tr\|Q9FM86\|ADT5_ARATH	2E-160	Probable ADP,ATP carrier protein At5g56450
trEMBL	tr\|A0A061GL84\|A0A061GL84_THECC	2E-172	Mitochondrial substrate carrier family protein {ECO:0000313\|EMBL:EOY29922.1}
TAIR10	AT5G56450.1	2E-122	Mitochondrial substrate carrier family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	26631797	26639108	-
GWHAAZE00000007	mRNA	26631797	26639108	-
GWHAAZE00000007	exon	26638863	26639108	-
GWHAAZE00000007	exon	26633685	26633760	-
GWHAAZE00000007	exon	26631797	26632458	-
GWHAAZE00000007	CDS	26638863	26639108	-
GWHAAZE00000007	CDS	26633685	26633760	-
GWHAAZE00000007	CDS	26631797	26632458	-

Transcript Sequence
>GWHTAAZE023834 ATGGCTGGGGCTGTAATGGGTGGTGTGGTGCACACGATTGTGGCCCCAATTGAAAGAGCTAAGCTCCTTTTACAAACCCAAGAGAGTAATATGGCAATTCTTTCTTCTCCTCATAGGAGATTCAAGGGTATGGTTGATTGTATTGTCCGTACGGTTAAAGAAGAAGGGATTTTGTCTTTGTGGAGAGGGAATGGGAGCAGTGTTCTCAGATATTATCCCTCTGTTGCCCTCAATTTCTCACTCAAGTTGGAGAAACGGCAAAATAAGGGCAACACCAAAACCATCGTTCTAGCAGCGAAACAAAGCAGTCAATCGGAAAACGGTCCATACTTTATCATTCCTCAGGATCTCTATCGAAACATCTTGAGAAGTGGCCATTTTCAAGAGGGCCATATCATGCCCGCGGCATCAGCCAACTTCATAGCGGGTGCTGCAGCCGGTTGCACCACCCTCATCATCATCTACCCTCTTGACATAGCCCACACCCGCCTAGCCGCCGACATTGGACGGACCGAATCTCGTCAATTCCGAGGAATCTCCCACTTCCTCAGCACCGTACGCAAAAAACACGGAATCCGAGGAATCTATAAAGGCCTCCCGGCCTCCCTCCACGGAATGATCATCCACCGGGGGCTCTACTTTGGCGGCTTCGATACCATAAAAGAGAGGATGGCTTCGTCGTCGGATGGTTCAAATGCTGAGGTGGCGCTGTGGAAGCGGTGGGTGGTGGCCCAGGCGGTGACTACATCGGCCGGGTTGCTCTCATATCCATTGGATACGGTCCGGAGAAGGATGATGATGCAATCGGGATTAGAACATCCCATGTACATGAACACATTGGATTGTTGGAGGAAGATTTATAGGACAGGTGGAGTTGCGTCGTTTTACCATGGCGCACTTTCAAACATGTTTAGGAGTACTGGTGCTGCTGCCATTTTGGTTTTGTATGATGAGGTGAAGAAGTTCCTGTGGGGCGGATTGTAA

Network for GWHGAAZE023804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.28	Mito_carr	1	81	1.10E-15
PF00153.28	Mito_carr	138	225	8.30E-19
PF00153.28	Mito_carr	236	323	3.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05863	SLC25A4S, ANT	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Necroptosis	map04217
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005743	cellular_component	mitochondrial inner membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.403
	SRR3591706	second leaf	2.153
	SRR3591707	mature leaf	2.596
	SRR3591708	Shoot apex	3.645
	SRR3591709	Stem	2.831
	SRR3591710	White floral bud	20.574
	SRR3591711	White flower	36.362
	SRR3591712	Green floral bud	20.273
	SRR3591713	Yellow flower	29.825
SRP173429	SRR8316895	Juvenile bud stage	7.722
	SRR8316896	Juvenile bud stage	10.107
	SRR8316897	Juvenile bud stage	4.628
	SRR8316894	Third green stage	6.880
	SRR8316900	Third green stage	19.780
	SRR8316901	Third green stage	19.838
	SRR8316898	Complete white stage	9.394
	SRR8316899	Complete white stage	29.076
	SRR8316903	Complete white stage	15.583
	SRR8316902	Silver flowering stage	13.257
	SRR8316904	Silver flowering stage	13.397
	SRR8316905	Silver flowering stage	7.173
	SRR8316906	Gold flowering stage	18.848
	SRR8316907	Gold flowering stage	27.249
	SRR8316908	Gold flowering stage	26.138
SRP132670	SRR6706286	Control	19.617
	SRR6706287	Light intensity 50%	20.506
	SRR6706288	Light intensity 20%	21.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.507
	CNS0095593	Slightly white alabastrum(diploid) 2	16.125
	CNS0095594	Slightly white alabastrum(diploid) 3	20.253
	CNS0095595	Whole white alabastrum(diploid) 2	18.856
	CNS0095596	Whole white alabastrum(diploid) 3	17.828
	CNS0095597	Whole white alabastrum(diploid) 4	16.323
	CNS0095598	Silvery flower (diploied) 1	15.803
	CNS0095599	Silvery flower (diploied) 2	18.061
	CNS0095600	Silvery flower (diploied) 3	25.060
	CNS0095601	Golden flower (diploid) 1	11.758
	CNS0095602	Golden flower (diploid) 2	18.265
	CNS0095603	Golden flower (diploid) 3	19.583
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.591
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.519
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.700
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.446
	CNS0095610	Silvery flower (tetraploid) 1	21.362
	CNS0095611	Silvery flower (tetraploid) 2	18.953
	CNS0095612	Silvery flower (tetraploid) 3	37.502
	CNS0095613	Golden flower (tetraploid) 1	23.268
	CNS0095614	Golden flower (tetraploid) 2	24.962
	CNS0095615	Golden flower (tetraploid) 3	21.531
CRA001975	CRR073297	Stem 1	9.476
	CRR073298	Stem 2	9.342
	CRR073299	Stem 3	9.905
	CRR073300	Leaf 1	14.477
	CRR073301	Leaf 2	13.902
	CRR073302	Leaf 3	12.453
	CRR073303	Juvenile bud 1	12.909
	CRR073304	Juvenile bud 2	11.395
	CRR073305	Juvenile bud 3	11.071
	CRR073306	Third green 1	20.163
	CRR073307	Third green 2	22.311
	CRR073308	Third green 3	19.570
	CRR073309	Second white 1	18.158
	CRR073310	Second white 2	26.299
	CRR073311	Second white 3	17.793
	CRR073312	Silver flowering 1	17.527
	CRR073313	Silver flowering 2	13.723
	CRR073314	Silver flowering 3	19.395
	CRR073315	Gold flowering 1	2.792
	CRR073316	Gold flowering 2	3.978
	CRR073317	Gold flowering 3	3.482
	CRR073318	Tawny withering 1	6.431
	CRR073319	Tawny withering 2	4.071
	CRR073320	Tawny withering 3	3.633