Detail information of GWHGAAZE023776


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280119.20PREDICTED: serine/threonine-protein kinase 38-like [Vitis vinifera]
COGYP_643722.12E-24serine/threonine protein kinase
Swissprottr|Q9LE81|IRE_ARATH4E-69Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBLtr|F6H3P6|F6H3P6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46579.1}
TAIR10AT4G33080.10AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2561842025635128-
GWHAAZE00000007mRNA2561842025635128-
GWHAAZE00000007exon2563498925635128-
GWHAAZE00000007exon2562959525629769-
GWHAAZE00000007exon2562670225626785-
GWHAAZE00000007exon2562602025626261-
GWHAAZE00000007exon2562544525625688-
GWHAAZE00000007exon2562480525624884-
GWHAAZE00000007exon2562204525622129-
GWHAAZE00000007exon2562097225621103-
GWHAAZE00000007exon2561950825619555-
GWHAAZE00000007exon2561842025618536-
GWHAAZE00000007CDS2563498925635128-
GWHAAZE00000007CDS2562959525629769-
GWHAAZE00000007CDS2562670225626785-
GWHAAZE00000007CDS2562602025626261-
GWHAAZE00000007CDS2562544525625688-
GWHAAZE00000007CDS2562480525624884-
GWHAAZE00000007CDS2562204525622129-
GWHAAZE00000007CDS2562097225621103-
GWHAAZE00000007CDS2561950825619555-
GWHAAZE00000007CDS2561842025618536-
Transcript Sequence

Network for GWHGAAZE023776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase932411.10E-42
PF00069.26Pkinase2913861.10E-18
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyAGC_NDR

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.549
SRR3591706second leaf31.575
SRR3591707mature leaf30.430
SRR3591708Shoot apex33.558
SRR3591709Stem37.169
SRR3591710White floral bud15.685
SRR3591711White flower14.717
SRR3591712Green floral bud22.679
SRR3591713Yellow flower9.748
SRP173429 SRR8316895Juvenile bud stage 10.423
SRR8316896Juvenile bud stage 15.889
SRR8316897Juvenile bud stage 7.924
SRR8316894Third green stage 9.026
SRR8316900Third green stage 26.111
SRR8316901Third green stage 19.366
SRR8316898Complete white stage 5.227
SRR8316899Complete white stage 28.718
SRR8316903Complete white stage 10.048
SRR8316902Silver flowering stage2.716
SRR8316904Silver flowering stage5.528
SRR8316905Silver flowering stage1.808
SRR8316906Gold flowering stage 5.703
SRR8316907Gold flowering stage 5.437
SRR8316908Gold flowering stage 7.440
SRP132670SRR6706286Control9.994
SRR6706287Light intensity 50%11.429
SRR6706288Light intensity 20%11.187
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.104
CNS0095593Slightly white alabastrum(diploid) 213.665
CNS0095594Slightly white alabastrum(diploid) 39.797
CNS0095595Whole white alabastrum(diploid) 28.926
CNS0095596Whole white alabastrum(diploid) 37.454
CNS0095597Whole white alabastrum(diploid) 47.638
CNS0095598Silvery flower (diploied) 112.464
CNS0095599Silvery flower (diploied) 26.886
CNS0095600Silvery flower (diploied) 310.929
CNS0095601Golden flower (diploid) 19.308
CNS0095602Golden flower (diploid) 212.650
CNS0095603Golden flower (diploid) 312.696
CNS0095604Slightly white alabastrum(tetraploid) 117.852
CNS0095605Slightly white alabastrum(tetraploid) 211.815
CNS0095606Slightly white alabastrum(tetraploid) 341.948
CNS0095607Whole white alabastrum(tetraploid) 18.417
CNS0095608Whole white alabastrum(tetraploid) 26.644
CNS0095609Whole white alabastrum(tetraploid) 325.720
CNS0095610Silvery flower (tetraploid) 120.396
CNS0095611Silvery flower (tetraploid) 223.236
CNS0095612Silvery flower (tetraploid) 38.836
CNS0095613Golden flower (tetraploid) 16.450
CNS0095614Golden flower (tetraploid) 220.011
CNS0095615Golden flower (tetraploid) 33.781
CRA001975CRR073297Stem 119.999
CRR073298Stem 223.629
CRR073299Stem 323.570
CRR073300Leaf 125.666
CRR073301Leaf 216.696
CRR073302Leaf 319.252
CRR073303Juvenile bud 119.514
CRR073304Juvenile bud 29.803
CRR073305Juvenile bud 314.702
CRR073306Third green 10.507
CRR073307Third green 20.474
CRR073308Third green 30.795
CRR073309Second white 10.760
CRR073310Second white 20.847
CRR073311Second white 30.876
CRR073312Silver flowering 10.054
CRR073313Silver flowering 21.443
CRR073314Silver flowering 30.830
CRR073315Gold flowering 13.420
CRR073316Gold flowering 27.599
CRR073317Gold flowering 32.822
CRR073318Tawny withering 114.393
CRR073319Tawny withering 214.922
CRR073320Tawny withering 312.682