Detail information of GWHGAAZE023762


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09361.11.386E-110unnamed protein product [Coffea canephora]
Swissprottr|Q9T034|SYFA_ARATH7E-87Probable phenylalanine--tRNA ligase alpha subunit
trEMBLtr|A0A068ULN0|A0A068ULN0_COFCA5E-111Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09361.1}
TAIR10AT4G39280.26E-73phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2528757425294535+
GWHAAZE00000007mRNA2528757425294535+
GWHAAZE00000007exon2528757425287720+
GWHAAZE00000007exon2528808525288207+
GWHAAZE00000007exon2528908825289210+
GWHAAZE00000007exon2529131925291411+
GWHAAZE00000007exon2529244725292503+
GWHAAZE00000007exon2529392625293981+
GWHAAZE00000007exon2529419025294282+
GWHAAZE00000007exon2529443325294535+
GWHAAZE00000007CDS2528757425287720+
GWHAAZE00000007CDS2528808525288207+
GWHAAZE00000007CDS2528908825289210+
GWHAAZE00000007CDS2529131925291411+
GWHAAZE00000007CDS2529244725292503+
GWHAAZE00000007CDS2529392625293981+
GWHAAZE00000007CDS2529419025294282+
GWHAAZE00000007CDS2529443325294535+
Transcript Sequence

Network for GWHGAAZE023762

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18552.2PheRS_DBD13563.60E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01889FARSA, pheS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.630
SRR3591706second leaf11.697
SRR3591707mature leaf8.335
SRR3591708Shoot apex16.080
SRR3591709Stem20.978
SRR3591710White floral bud15.155
SRR3591711White flower22.461
SRR3591712Green floral bud25.755
SRR3591713Yellow flower15.998
SRP173429 SRR8316895Juvenile bud stage 6.944
SRR8316896Juvenile bud stage 11.521
SRR8316897Juvenile bud stage 10.205
SRR8316894Third green stage 4.814
SRR8316900Third green stage 11.569
SRR8316901Third green stage 9.993
SRR8316898Complete white stage 3.062
SRR8316899Complete white stage 10.996
SRR8316903Complete white stage 3.405
SRR8316902Silver flowering stage2.093
SRR8316904Silver flowering stage2.063
SRR8316905Silver flowering stage1.083
SRR8316906Gold flowering stage 6.411
SRR8316907Gold flowering stage 6.103
SRR8316908Gold flowering stage 11.505
SRP132670SRR6706286Control24.426
SRR6706287Light intensity 50%21.242
SRR6706288Light intensity 20%22.946
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.650
CNS0095593Slightly white alabastrum(diploid) 26.674
CNS0095594Slightly white alabastrum(diploid) 35.877
CNS0095595Whole white alabastrum(diploid) 29.422
CNS0095596Whole white alabastrum(diploid) 310.290
CNS0095597Whole white alabastrum(diploid) 410.866
CNS0095598Silvery flower (diploied) 17.703
CNS0095599Silvery flower (diploied) 29.491
CNS0095600Silvery flower (diploied) 39.012
CNS0095601Golden flower (diploid) 15.650
CNS0095602Golden flower (diploid) 27.792
CNS0095603Golden flower (diploid) 37.636
CNS0095604Slightly white alabastrum(tetraploid) 123.280
CNS0095605Slightly white alabastrum(tetraploid) 219.053
CNS0095606Slightly white alabastrum(tetraploid) 324.757
CNS0095607Whole white alabastrum(tetraploid) 115.967
CNS0095608Whole white alabastrum(tetraploid) 214.212
CNS0095609Whole white alabastrum(tetraploid) 325.247
CNS0095610Silvery flower (tetraploid) 115.377
CNS0095611Silvery flower (tetraploid) 216.659
CNS0095612Silvery flower (tetraploid) 313.513
CNS0095613Golden flower (tetraploid) 15.873
CNS0095614Golden flower (tetraploid) 29.697
CNS0095615Golden flower (tetraploid) 35.776
CRA001975CRR073297Stem 110.541
CRR073298Stem 211.960
CRR073299Stem 39.492
CRR073300Leaf 111.553
CRR073301Leaf 210.712
CRR073302Leaf 37.402
CRR073303Juvenile bud 18.209
CRR073304Juvenile bud 26.364
CRR073305Juvenile bud 37.661
CRR073306Third green 11.425
CRR073307Third green 20.717
CRR073308Third green 31.140
CRR073309Second white 11.261
CRR073310Second white 21.266
CRR073311Second white 31.215
CRR073312Silver flowering 10.546
CRR073313Silver flowering 20.977
CRR073314Silver flowering 30.549
CRR073315Gold flowering 12.671
CRR073316Gold flowering 22.787
CRR073317Gold flowering 31.826
CRR073318Tawny withering 15.314
CRR073319Tawny withering 25.734
CRR073320Tawny withering 35.993