Gene detail

Detail information of GWHGAAZE023659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281862.2	0	PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Vitis vinifera]
Swissprot	tr\|P49082\|GPA1_LOTJA	0	Guanine nucleotide-binding protein alpha-1 subunit
trEMBL	tr\|F6H2T2\|F6H2T2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46617.1}
TAIR10	AT2G26300.1	8E-153	G protein alpha subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	21175852	21180080	+
GWHAAZE00000007	mRNA	21175852	21180080	+
GWHAAZE00000007	exon	21175852	21175941	+
GWHAAZE00000007	exon	21176407	21176514	+
GWHAAZE00000007	exon	21176642	21176743	+
GWHAAZE00000007	exon	21176966	21177021	+
GWHAAZE00000007	exon	21177729	21177863	+
GWHAAZE00000007	exon	21178404	21178497	+
GWHAAZE00000007	exon	21178596	21178655	+
GWHAAZE00000007	exon	21178732	21178811	+
GWHAAZE00000007	exon	21179903	21180080	+
GWHAAZE00000007	CDS	21175852	21175941	+
GWHAAZE00000007	CDS	21176407	21176514	+
GWHAAZE00000007	CDS	21176642	21176743	+
GWHAAZE00000007	CDS	21176966	21177021	+
GWHAAZE00000007	CDS	21177729	21177863	+
GWHAAZE00000007	CDS	21178404	21178497	+
GWHAAZE00000007	CDS	21178596	21178655	+
GWHAAZE00000007	CDS	21178732	21178811	+
GWHAAZE00000007	CDS	21179903	21180080	+

Transcript Sequence
>GWHTAAZE023689 ATGTTTAAACAGATATTGTATGACGGGGCAAAGGAATTGGCTCAATATGAAGCAGATTCCTCGAAGTATGTTTTATCAGATGATAATAAGGAAATTGGAGAGAAAATATCAGATATTGGGGGCAGACTGGATTATCCGCACCTTACCAAAGAGCTTGCACAGGAGATAGAAACTCTCTGGAAAGATGCTGCAATACAGGAAACATGTTCTCGTGGTAATGAACTCCAAGTTCCGGACTGTGCCCATTATTTCATGGAAAATTTGCAAAGATTGTCTGCTGTAAATTATGTTCCGACAAAGGATGATGTTCTCTATGCTAGAGTTCGTACAACTGGTGTTGTTGAAATCCAGTTCAGCCCGGTCGGAGAGCACAAAAAAAGTGGTGAAGTATATCGGCTCTTTGATGTTGGAGGGCAGAGAAATGAGAGAAGGAAGTGGATTCATCTATTTGAAGGTGTTACAGCTGTCATATTTTGTGCTGCTATTAGCGAGTATGACCAAACGCTATTTGAGGATGAGAGCAAGAATCGAATGATGGAGACCAAGGAACTCTTTGAATGGGTCCTTAAGCAACAATGCTTTAAGAAAACATCCTTCATGCTGTTTCTAAACAAATTTGATATATTTGAGAAGAAGGTTCTAAAAGTACCACTGAACGTATGTGAATGGTTCAAAGATTACCAGCCGGCTTCAACAGGAAAACAAGAGATTGAGCATGCATATGAGTTTGTGAAGAAGAAATTCGAGGAGTTGTATTTCCAAAGCAGCGCCCCAGATTGTGTGGACCGCGTATTTAAGATCTACAGAACCACTGCGCTTGACCAGAAGCTCGTGAAGAAGACATTCAAACTTGTAGACGAGACCTTGAGAAGGAGAAACCTCTTTGAAGCGGGCTTGTTGTGA

Network for GWHGAAZE023659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00503.21	G-alpha	10	288	2.00E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19729	GNAT3	Carbohydrate digestion and absorption	map04973
K19729	GNAT3	Taste transduction	map04742

Gene Ontology

GO term	Ontology	Name
GO:0007186	biological_process	G protein-coupled receptor signaling pathway
GO:0007165	biological_process	signal transduction
GO:0007188	biological_process	adenylate cyclase-modulating G protein-coupled receptor signaling pathway
GO:0005834	cellular_component	heterotrimeric G-protein complex
GO:0003924	molecular_function	GTPase activity
GO:0019001	molecular_function	guanyl nucleotide binding
GO:0031683	molecular_function	G-protein beta/gamma-subunit complex binding
GO:0001664	molecular_function	G protein-coupled receptor binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.444
	SRR3591706	second leaf	13.622
	SRR3591707	mature leaf	11.682
	SRR3591708	Shoot apex	22.134
	SRR3591709	Stem	28.089
	SRR3591710	White floral bud	24.869
	SRR3591711	White flower	16.930
	SRR3591712	Green floral bud	18.772
	SRR3591713	Yellow flower	14.843
SRP173429	SRR8316895	Juvenile bud stage	10.244
	SRR8316896	Juvenile bud stage	9.481
	SRR8316897	Juvenile bud stage	5.752
	SRR8316894	Third green stage	5.480
	SRR8316900	Third green stage	13.950
	SRR8316901	Third green stage	14.858
	SRR8316898	Complete white stage	6.616
	SRR8316899	Complete white stage	33.027
	SRR8316903	Complete white stage	10.403
	SRR8316902	Silver flowering stage	4.987
	SRR8316904	Silver flowering stage	8.549
	SRR8316905	Silver flowering stage	3.644
	SRR8316906	Gold flowering stage	10.123
	SRR8316907	Gold flowering stage	8.975
	SRR8316908	Gold flowering stage	13.997
SRP132670	SRR6706286	Control	8.744
	SRR6706287	Light intensity 50%	10.506
	SRR6706288	Light intensity 20%	10.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.579
	CNS0095593	Slightly white alabastrum(diploid) 2	9.257
	CNS0095594	Slightly white alabastrum(diploid) 3	10.546
	CNS0095595	Whole white alabastrum(diploid) 2	8.426
	CNS0095596	Whole white alabastrum(diploid) 3	8.642
	CNS0095597	Whole white alabastrum(diploid) 4	9.195
	CNS0095598	Silvery flower (diploied) 1	12.758
	CNS0095599	Silvery flower (diploied) 2	10.496
	CNS0095600	Silvery flower (diploied) 3	6.232
	CNS0095601	Golden flower (diploid) 1	10.327
	CNS0095602	Golden flower (diploid) 2	6.220
	CNS0095603	Golden flower (diploid) 3	6.493
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.743
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.744
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.624
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.065
	CNS0095610	Silvery flower (tetraploid) 1	9.122
	CNS0095611	Silvery flower (tetraploid) 2	7.775
	CNS0095612	Silvery flower (tetraploid) 3	15.956
	CNS0095613	Golden flower (tetraploid) 1	4.379
	CNS0095614	Golden flower (tetraploid) 2	6.459
	CNS0095615	Golden flower (tetraploid) 3	3.583
CRA001975	CRR073297	Stem 1	16.222
	CRR073298	Stem 2	14.636
	CRR073299	Stem 3	9.533
	CRR073300	Leaf 1	13.222
	CRR073301	Leaf 2	13.275
	CRR073302	Leaf 3	9.164
	CRR073303	Juvenile bud 1	10.532
	CRR073304	Juvenile bud 2	7.695
	CRR073305	Juvenile bud 3	9.257
	CRR073306	Third green 1	6.689
	CRR073307	Third green 2	6.552
	CRR073308	Third green 3	6.099
	CRR073309	Second white 1	4.723
	CRR073310	Second white 2	4.126
	CRR073311	Second white 3	3.981
	CRR073312	Silver flowering 1	3.322
	CRR073313	Silver flowering 2	1.167
	CRR073314	Silver flowering 3	1.440
	CRR073315	Gold flowering 1	2.021
	CRR073316	Gold flowering 2	7.298
	CRR073317	Gold flowering 3	2.468
	CRR073318	Tawny withering 1	12.247
	CRR073319	Tawny withering 2	12.992
	CRR073320	Tawny withering 3	11.443