Detail information of GWHGAAZE023654


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004303450.11.09599E-62PREDICTED: copper transporter 5-like [Fragaria vesca subsp. vesca]
Swissprottr|Q93VM8|COPT5_ARATH2E-50Copper transporter 5
trEMBLtr|E9LK45|E9LK45_VITVI5E-62Copper transporter {ECO:0000313|EMBL:ADW93919.1}
TAIR10AT5G20650.13E-31copper transporter 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene2095906520959517+
GWHAAZE00000007mRNA2095906520959517+
GWHAAZE00000007exon2095906520959517+
GWHAAZE00000007CDS2095906520959517+
Transcript Sequence

Network for GWHGAAZE023654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04145.16Ctr41301.90E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14686SLC31A1, CTR1 Mineral absorption map04978

Gene Ontology

GO term OntologyName
GO:0035434biological_processcopper ion transmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005375molecular_functioncopper ion transmembrane transporter activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE023654.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300255075125150175225250275Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.898
SRR3591706second leaf62.726
SRR3591707mature leaf73.815
SRR3591708Shoot apex53.665
SRR3591709Stem231.187
SRR3591710White floral bud128.801
SRR3591711White flower116.411
SRR3591712Green floral bud101.612
SRR3591713Yellow flower106.728
SRP173429 SRR8316895Juvenile bud stage 36.185
SRR8316896Juvenile bud stage 60.609
SRR8316897Juvenile bud stage 20.571
SRR8316894Third green stage 25.415
SRR8316900Third green stage 71.439
SRR8316901Third green stage 75.342
SRR8316898Complete white stage 78.647
SRR8316899Complete white stage 141.400
SRR8316903Complete white stage 131.539
SRR8316902Silver flowering stage71.521
SRR8316904Silver flowering stage96.551
SRR8316905Silver flowering stage53.889
SRR8316906Gold flowering stage 163.829
SRR8316907Gold flowering stage 149.453
SRR8316908Gold flowering stage 136.954
SRP132670SRR6706286Control106.742
SRR6706287Light intensity 50%94.368
SRR6706288Light intensity 20%103.115
CNP0000432CNS0095592Slightly white alabastrum(diploid) 180.430
CNS0095593Slightly white alabastrum(diploid) 281.069
CNS0095594Slightly white alabastrum(diploid) 368.903
CNS0095595Whole white alabastrum(diploid) 280.262
CNS0095596Whole white alabastrum(diploid) 373.904
CNS0095597Whole white alabastrum(diploid) 495.366
CNS0095598Silvery flower (diploied) 1109.329
CNS0095599Silvery flower (diploied) 2125.422
CNS0095600Silvery flower (diploied) 3217.140
CNS0095601Golden flower (diploid) 1154.331
CNS0095602Golden flower (diploid) 2248.199
CNS0095603Golden flower (diploid) 3239.296
CNS0095604Slightly white alabastrum(tetraploid) 162.404
CNS0095605Slightly white alabastrum(tetraploid) 258.578
CNS0095606Slightly white alabastrum(tetraploid) 351.955
CNS0095607Whole white alabastrum(tetraploid) 172.132
CNS0095608Whole white alabastrum(tetraploid) 269.315
CNS0095609Whole white alabastrum(tetraploid) 349.612
CNS0095610Silvery flower (tetraploid) 195.159
CNS0095611Silvery flower (tetraploid) 2151.737
CNS0095612Silvery flower (tetraploid) 3195.588
CNS0095613Golden flower (tetraploid) 1199.098
CNS0095614Golden flower (tetraploid) 2101.212
CNS0095615Golden flower (tetraploid) 3134.598
CRA001975CRR073297Stem 1102.979
CRR073298Stem 296.175
CRR073299Stem 3124.101
CRR073300Leaf 197.626
CRR073301Leaf 2122.572
CRR073302Leaf 3109.425
CRR073303Juvenile bud 1172.559
CRR073304Juvenile bud 2225.655
CRR073305Juvenile bud 3221.957
CRR073306Third green 1179.645
CRR073307Third green 2234.717
CRR073308Third green 3170.788
CRR073309Second white 1281.841
CRR073310Second white 2182.590
CRR073311Second white 3151.197
CRR073312Silver flowering 1194.855
CRR073313Silver flowering 2250.024
CRR073314Silver flowering 3213.993
CRR073315Gold flowering 1163.882
CRR073316Gold flowering 2172.070
CRR073317Gold flowering 3215.289
CRR073318Tawny withering 1219.897
CRR073319Tawny withering 2193.189
CRR073320Tawny withering 3200.176