Gene detail

Detail information of GWHGAAZE023647

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIX87510.1	0	carotenoid cleavage dioxygenase 4 [Lycium barbarum]
COG	YP_007064275.1	8E-84	9-cis-epoxycarotenoid dioxygenase
Swissprot	tr\|O49675\|CCD4_ARATH	0	Probable carotenoid cleavage dioxygenase 4, chloroplastic (Precursor)
trEMBL	tr\|A0A061G7F7\|A0A061G7F7_THECC	0	Nine-cis-epoxycarotenoid dioxygenase 4 {ECO:0000313\|EMBL:EOY25343.1}
TAIR10	AT4G19170.1	0	nine-cis-epoxycarotenoid dioxygenase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	20793477	20797709	+
GWHAAZE00000007	mRNA	20793477	20797709	+
GWHAAZE00000007	exon	20793477	20794894	+
GWHAAZE00000007	exon	20797349	20797709	+
GWHAAZE00000007	CDS	20793477	20794894	+
GWHAAZE00000007	CDS	20797349	20797709	+

Transcript Sequence
>GWHTAAZE023677 ATGGATGCCCTCTCCTCTTCTTTTCTTTCTACATTGTCTCACCCAAAAACACTTCTCTCTCAAACACCCACCACAACCAAACTCAATATCTCCGCCGTCAGAATTGAAGAAAAACCATACACCACCACTACCACCAGAACCACCACCACCTCTCAACCACTAAAACAACCTCAAAAACCTATTCCAGCAAAACCAACAGCCACGGCACCAACAGCACCACCACCGGCACCGTCCCTTTCAACTACAATCTTCAACGCATTCGACGACATCATAAACAACTTCATCGACCCACCAAATAAACCTGCGGTGGACCCGAGGCATGTCTTGTCCGACAACTTTGCCCCGGTAGATGAGCTCCCACCGACCGAGTGCCATGTGATACACGGCACCCTCCCACCGTGCCTCGACGGTGCGTATATACGCAATGGGCCAAACCCTCAATACCTTCCCCGCGGGCCGTATCACCTCTTTGACGGTGATGGGATGCTACACTCGATAAAAATCTCAGGCGGAAGAGCCACCTTTTGTAGCCGCTATGTCAAGACGTACAAGTACACAATTGAGCGTGATGCCGGCTCACCCATCCTCCCTAACGTATTTTCCGGATTCAACGGCCTAGCAGCCTCCGCCGCACGTGGTGGCCTCTCGGCAGTCCGATTTCTCGCCGGACAATTTGATCCGACTAACGGCATTGGCTTAGCAAACACCAGCTTGTCTCTCTTCGGTGGTGCCCTCTACGCCCTTGGTGAATCTGATCTCCCTTACGTCGTAAAAGTAACCCCAAACGGCGACGTTTTAACTCTAAATCGACACGATTTTGACGGCGAGCTTTCGATGAGCATGACAGCACACCCGAAAATTGACCCGGATACCGGTGAGACTTTTGCCTTCCGGTACGGACCTATTCCGCCGTACCTCACTTTTTTCCGGTTCGACAAAACCGGAAAAAAACAACCGGACGTCCCCATCTTCTCGATGAAAACCCCGTCTTTTCTTCACGATTTTGCCATTACGAAAAAGTATGCAATTTTCGGCGACATTCAAATAGGGATGAATCCAATGGACATGATTTTCAACGGTGGATCGCCAGTGGGGGCCGATCCGGGGAAGGTGCCGAGGATCGGGGTGATACCAAGGTATGCGAAAGACGAGTCAGAGATGAGGTGGTTCGATGTGCCGGGGTTTAACATGATACACGCAATTAACGCATGGGACGAGGATGACGGAGATACAGTGGTGATGGTGGCGCCGAATATACTGTCGGTAGAACATACGCTGGAGAGGTTGGAGCTGATACACGCATCGGTGGAGAAAGTGAAGATTAATCTCAAGACTGGGATGGTGTCTAGGCACCCAGTGTCGACGAGAAATCTAGATTTCGCCGTGATTAATCCAGCTTTCGTCGCTAAAAAGAACAAGTATGTGTTTGCTGCGGTTGGGGATCCAATGCCAAAGGTAATTGGTGTAGTTAAACTAGATGTATCGATGTCGGAAACTAATCGTTGCGAATGCATAGTAGCTAGTCGAATGTACGGACCAGGGTGTTACGGTGGTGAGCCATTCTTTGTCGCGAGGGATCCACAAAACCCTAATGCGAAGGAGGACGATGGTTACATCGTATCGTACATGCATAATGAGAACACAGGGGAGTCAAGATTTTTGGTAATGGATGCTCAATCTCCTGATCTTGAAATTGTGGCCGCCGTGAAGCTACCTCGCCGAGTGCCATATGGATTTCACGGACTCTTCGTGAGAGAAGATGACCTCAATAAATTGTAA

Network for GWHGAAZE023647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	115	584	4.80E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.964
	SRR3591706	second leaf	55.576
	SRR3591707	mature leaf	360.179
	SRR3591708	Shoot apex	13.771
	SRR3591709	Stem	37.990
	SRR3591710	White floral bud	202.187
	SRR3591711	White flower	9.532
	SRR3591712	Green floral bud	134.692
	SRR3591713	Yellow flower	1.334
SRP173429	SRR8316895	Juvenile bud stage	12.805
	SRR8316896	Juvenile bud stage	65.164
	SRR8316897	Juvenile bud stage	25.874
	SRR8316894	Third green stage	31.855
	SRR8316900	Third green stage	53.460
	SRR8316901	Third green stage	41.918
	SRR8316898	Complete white stage	10.224
	SRR8316899	Complete white stage	102.405
	SRR8316903	Complete white stage	20.776
	SRR8316902	Silver flowering stage	1.386
	SRR8316904	Silver flowering stage	2.417
	SRR8316905	Silver flowering stage	1.424
	SRR8316906	Gold flowering stage	1.303
	SRR8316907	Gold flowering stage	1.789
	SRR8316908	Gold flowering stage	11.136
SRP132670	SRR6706286	Control	67.728
	SRR6706287	Light intensity 50%	65.140
	SRR6706288	Light intensity 20%	57.295
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.784
	CNS0095593	Slightly white alabastrum(diploid) 2	26.526
	CNS0095594	Slightly white alabastrum(diploid) 3	33.855
	CNS0095595	Whole white alabastrum(diploid) 2	28.277
	CNS0095596	Whole white alabastrum(diploid) 3	34.227
	CNS0095597	Whole white alabastrum(diploid) 4	28.012
	CNS0095598	Silvery flower (diploied) 1	24.647
	CNS0095599	Silvery flower (diploied) 2	7.945
	CNS0095600	Silvery flower (diploied) 3	6.721
	CNS0095601	Golden flower (diploid) 1	10.489
	CNS0095602	Golden flower (diploid) 2	15.798
	CNS0095603	Golden flower (diploid) 3	14.482
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.685
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.776
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.544
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.334
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.718
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.365
	CNS0095610	Silvery flower (tetraploid) 1	6.110
	CNS0095611	Silvery flower (tetraploid) 2	12.259
	CNS0095612	Silvery flower (tetraploid) 3	3.028
	CNS0095613	Golden flower (tetraploid) 1	2.303
	CNS0095614	Golden flower (tetraploid) 2	4.793
	CNS0095615	Golden flower (tetraploid) 3	7.279
CRA001975	CRR073297	Stem 1	74.363
	CRR073298	Stem 2	174.492
	CRR073299	Stem 3	99.561
	CRR073300	Leaf 1	59.324
	CRR073301	Leaf 2	57.100
	CRR073302	Leaf 3	48.317
	CRR073303	Juvenile bud 1	41.925
	CRR073304	Juvenile bud 2	29.538
	CRR073305	Juvenile bud 3	45.228
	CRR073306	Third green 1	4.782
	CRR073307	Third green 2	4.470
	CRR073308	Third green 3	6.298
	CRR073309	Second white 1	0.563
	CRR073310	Second white 2	0.997
	CRR073311	Second white 3	0.777
	CRR073312	Silver flowering 1	1.330
	CRR073313	Silver flowering 2	0.702
	CRR073314	Silver flowering 3	1.451
	CRR073315	Gold flowering 1	177.303
	CRR073316	Gold flowering 2	277.274
	CRR073317	Gold flowering 3	246.428
	CRR073318	Tawny withering 1	8.969
	CRR073319	Tawny withering 2	6.288
	CRR073320	Tawny withering 3	10.216