Gene detail

Detail information of GWHGAAZE023593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004246199.2	5.5662E-153	PREDICTED: growth-regulating factor 4-like [Solanum lycopersicum]
Swissprot	tr\|Q6AWY6\|GRF3_ORYSJ	6E-75	Growth-regulating factor 3
trEMBL	tr\|K4CMW2\|K4CMW2_SOLLC	2E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g075950.1.1}
TAIR10	AT3G13960.1	1E-36	growth-regulating factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	16104902	16115972	-
GWHAAZE00000007	mRNA	16104902	16115972	-
GWHAAZE00000007	exon	16104902	16105094	-
GWHAAZE00000007	exon	16105983	16106481	-
GWHAAZE00000007	exon	16112790	16113168	-
GWHAAZE00000007	exon	16115001	16115276	-
GWHAAZE00000007	exon	16115768	16115972	-
GWHAAZE00000007	five_prime_UTR	16115768	16115972	-
GWHAAZE00000007	five_prime_UTR	16115215	16115276	-
GWHAAZE00000007	CDS	16115001	16115214	-
GWHAAZE00000007	CDS	16112790	16113168	-
GWHAAZE00000007	CDS	16105983	16106481	-
GWHAAZE00000007	CDS	16105044	16105094	-
GWHAAZE00000007	three_prime_UTR	16104902	16105043	-

Transcript Sequence
>GWHTAAZE023623 AAAAACTCACACCAGTACTAGTAGTAATAATCAGACCTCAAATCAAATCATCAAAACCCAAAACTCACAAATGCTACCCTCAGTTTAACTGATAGTATATACTTGAAAAGGCCCCCACTTTTTCCCAGCTTTTTCTTGTGTGCTCTCTCATATTCCCTCCATCCATTACTAGCTATGGCCAAACCCTAGATCTGTTCCCCCAAAGTTTTTTGTTGAAAGTACAAGGACCACAGCTGTTTAGTGGGAATAATAATAGATTTGAGTGAGATGAGTGGGAGTACGTCGGCCGTGACAGTGGCGTTAGCAGGAGAGGGGTTTTGGGGGCCATCGTTGACGGCGGTGCAGTGGCAGGAACTGGAGCATCAAGCCCTCATATACAAGTACTTGGTGGCGGGGATTCCGGTGCCTGCTGATCTCGTAATCCCCATTCGGATGAGTTTAGAGGCACTCTCTGCTAGCTTCTTTCACCACCCATCTACCCTGGGATACTGCTCCTATTATGGGAAAAAATTTGACCCTGAGCCCGGTAGGTGCCGGAGGACTGATGGAAAGAAGTGGAGGTGCTCCAAAGATGCCTATATGGACTCAAAATACTGTGAGCGGCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCTCAACCTACCTCTCAGTCTTTGTCAATTGCTGCTGCTACTGGGAGGAGCAGCAGCGGTGGAGGAGGAGGGACCTACCAAAGCAGTGGCAATGGAAGCTTCCAGAATCTTCCCCTGTACTCTGTGATTAAGTCAGATAATCTATCTTTTGGTAGCAACGTACCAAAGTTGAACGTGGAACCTGTTTCTTATGGGACTAATAACAAAGAGTACCGGTATATCCATGGAGGACTGACGCATGAGGTAGATGAACAAAATTTCTCTTCAGAAGCTTCCAGAATCGCAAGGGGTCTTGGAATGGACTCAGCTACGGCAGACAGCACATGGCAACTAATGCCTCCACAAGTCCACTCTGCCTCCTCCTTTTTCAAATCAAGAAACGAGCCTAATGTGCAAGGAAACTCCTTGGAACTGCACATGCCACAAACTTTTGAGCCTACCATGGTTGATGCTGCAGTTTCAAAGCAGCAGCAGCAACATTGCTTCTTTCGCAGCGAGATCGAAATTGGCTCTTCACCAGGAACTGCAAAACAGGAGGAGCCAAATTCGATGCGCCCTTTCTTTGACAATTGGCCTACTAAAGCTAGAGAATCATGGTCCGATCTTGACGAGGGGAGGAGATCTAACAAGAACACATTCTCCACTACTCAGCTATCAATCTCCACTCCAGTGGCTCCCTCGGATTTTTCAACAAGGAGTGCTTGTTCCCCGATGGTGCTGCAGATGCATGAGAAACTGCTGTCGCCAATGTCCAAACAGTTGTAAGATGTGTGCGTTTACTAATCTTTTTAGTTACTATTTTAAGATGAGCTCTTTGTACCCTCAGATTTGTATACTTTGAATGCTGCTGGACGAAATAAATGTACTCTAATGCCTCATATTCGAACCATTGTGTTCCAGTGGAAAT

Network for GWHGAAZE023593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	21	55	2.90E-14
PF08879.11	WRC	84	126	1.60E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.573
	SRR3591706	second leaf	2.030
	SRR3591707	mature leaf	0.708
	SRR3591708	Shoot apex	14.199
	SRR3591709	Stem	1.217
	SRR3591710	White floral bud	1.672
	SRR3591711	White flower	1.802
	SRR3591712	Green floral bud	0.839
	SRR3591713	Yellow flower	0.296
SRP173429	SRR8316895	Juvenile bud stage	2.898
	SRR8316896	Juvenile bud stage	2.648
	SRR8316897	Juvenile bud stage	0.796
	SRR8316894	Third green stage	0.819
	SRR8316900	Third green stage	0.802
	SRR8316901	Third green stage	0.837
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.958
	SRR8316903	Complete white stage	0.776
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.013
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.280
	SRR8316907	Gold flowering stage	0.204
	SRR8316908	Gold flowering stage	0.054
SRP132670	SRR6706286	Control	1.575
	SRR6706287	Light intensity 50%	1.458
	SRR6706288	Light intensity 20%	1.381
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.505
	CNS0095593	Slightly white alabastrum(diploid) 2	2.393
	CNS0095594	Slightly white alabastrum(diploid) 3	2.140
	CNS0095595	Whole white alabastrum(diploid) 2	2.167
	CNS0095596	Whole white alabastrum(diploid) 3	0.504
	CNS0095597	Whole white alabastrum(diploid) 4	1.577
	CNS0095598	Silvery flower (diploied) 1	6.934
	CNS0095599	Silvery flower (diploied) 2	8.475
	CNS0095600	Silvery flower (diploied) 3	1.117
	CNS0095601	Golden flower (diploid) 1	4.659
	CNS0095602	Golden flower (diploid) 2	2.982
	CNS0095603	Golden flower (diploid) 3	3.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.440
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.389
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.499
	CNS0095610	Silvery flower (tetraploid) 1	0.198
	CNS0095611	Silvery flower (tetraploid) 2	0.878
	CNS0095612	Silvery flower (tetraploid) 3	0.251
	CNS0095613	Golden flower (tetraploid) 1	0.146
	CNS0095614	Golden flower (tetraploid) 2	0.445
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	3.640
	CRR073298	Stem 2	2.049
	CRR073299	Stem 3	2.100
	CRR073300	Leaf 1	0.447
	CRR073301	Leaf 2	0.603
	CRR073302	Leaf 3	0.183
	CRR073303	Juvenile bud 1	0.252
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.290
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.193
	CRR073319	Tawny withering 2	0.126
	CRR073320	Tawny withering 3	0.559