Gene detail

Detail information of GWHGAAZE023589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006361250.1	0	PREDICTED: disease resistance protein RPM1-like [Solanum tuberosum]
COG	YP_007096836.1	0.0000008	WD40 repeat-containing protein
Swissprot	tr\|Q39214\|RPM1_ARATH	4E-135	Disease resistance protein RPM1
trEMBL	tr\|M1BL13\|M1BL13_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047579}
TAIR10	AT3G07040.1	5E-113	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	15814589	15817627	-
GWHAAZE00000007	mRNA	15814589	15817627	-
GWHAAZE00000007	exon	15817204	15817627	-
GWHAAZE00000007	exon	15815730	15816130	-
GWHAAZE00000007	exon	15814589	15815680	-
GWHAAZE00000007	CDS	15817204	15817627	-
GWHAAZE00000007	CDS	15815730	15816130	-
GWHAAZE00000007	CDS	15814589	15815680	-

Transcript Sequence
>GWHTAAZE023619 ATGGAGTTAGCTGCTGTGGAGTTCACTATAATATCCATCAATTCTGTTCTCAAGAAGAAATTCTTGGTTGTCGGAATTCGCCACGAAATTACAGAGTTGAAGGTCGAGCTGGAGAGTATGAGATCGTTCCTCAGAGTTGCTAATAAGTGCAACAATGACAAAAACGAATCGTTCGATTTCTGGGTGGCACAAGTACGAGACGCGGCATATAAAGCTGAGGACGCGATCGATGAGTTCGTGTATCATATTGAACATATAAGAGGACGACATGGGAGTTTGAAGGGTTTCTTCCACAGATTCCTTCATTTTCCGAAAGAGATATACGTGAGGTTTTTCACAGCCTTCAAATTTAACCAGATCAAAGAAGAGATCAAAGAGATCGCAAAGAGAAGCAAGAGATATGATATTTGTCATATAGAAGAAGGTTCGAGCTCTGATCCCACTGCCAAGTGGGTACAAAATATCGAGGAATCATCTTTCTTTGTCAAGGACAATGAAGTTGTGGGGAAGGAGCGAGAAAGAAGTATGCTGCTAAGGTGGTTGATGGATGAAGAACCCCAACTCGCAATCGTTTCAGTAGTAGGGATGGGCGGTTTAGGAAAGACAACACTAGTTGCTAATGCTTACAATGACCACAAAGTGAAGCGTTTTTTCGATTGTTTTGCTTGGGTTACCATCTCTCAAAACTACGTGATCGAGGACCTTCTTAGGAGGCTGATTATAGACTTTTGTTATGGGAAGAATGATCAGCTAGCTCATTTTGATTTAAAGACAATGGGCTATAAACAACTCAGAGACTTTAGTCCAAGTTTTGCAGAAAAAGAGATAAATGTTGCACTTCCTGATGGTAAAAATGGAAGTCGAGTCATAATATCAACTAGAAAGGAAGATGTAGCAATGTATCCATTTGGGGTTAGAAGCCATGTCCTCCACTCTCAGCCACTTACGGAGGATCAGGCTTGGACCCTCTTTTGCAACAAGACCTTTTCTAATGAACCTGAGAAAGCTTGTCCTCCAGATTTAGAAGATATAGCTAGGGACATGGTAAAGCGATGTGCAGGACTACCACTTGCAATTGTGGCTTTGGCGGGTCTCATGGCTTCTAAAGATAGGTCAGAATTGAAATGGAGGGCTGTTCATGACAGCATTGAATGGCATTGGACGGACAATCCTAGGCTTGAAGTAGTCAAAACGATTTTGTTTCTTAGTTTTCATGATTTACCATATTGCCTGAAAAAATGTTTTCTATATTGCTGTCGTTTCCCTGAAGGAGATTATTGGGTTGGAGGTGGTAGACTCATTAGATTGTGGGTGGCCGAAGGTTTTGTGGAAGAAAGAAAAGGTTTTACACCTGAGGAAGTTGGAAAAAGCTATCTCAAAGAACTCATTTCTCGAAACTTGCTTCAAGTACGGAAGAGCAATACCTTGTTAGGTGCCAAACAATGCCGACTCCATGATCTTATGAGAGAGCTTGCGCTTTCCATATCGGACAAGGAGAATTTCAGTTCCATATATGACTTACAAGCTGGAATAGAAAATGAGAGAAGGCCACGCCGTTTATGCCTACTTCACCCTATAGATGGCTCCACACCAATGTTTGCCCCTAATATGTCAAATGTTCGCTCTTTTGCGGCTTTTAACTTTTGTGATAACCCCACCTTGTCCTTGGGTTCTTTTTTATCTAGTTTTAGGTTATTAAGGGTATTGGAGTTGCGTGATGCACCAATAGATCATGTAACCACAACTATTGGGAAGTTATTCAACTTAAGATACTTGAACTTGAGTAGAACGCGTATAAAGGAGCTTCCAGAATCAATGTGGAGACTACGAAATTTACAGACGTTGGATATTAGGGAAACAAATATTGAAGAGCTTCCAAGTGGAATGCGTAGGTTGCGTAATATCGTCATTTACTGA

Network for GWHGAAZE023589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	8	87	2.60E-16
PF00931.23	NB-ARC	176	250	1.20E-17
PF00931.23	NB-ARC	275	405	1.20E-24
PF13855.7	LRR_8	566	622	7.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.937
	SRR3591706	second leaf	8.594
	SRR3591707	mature leaf	7.151
	SRR3591708	Shoot apex	3.328
	SRR3591709	Stem	0.878
	SRR3591710	White floral bud	3.476
	SRR3591711	White flower	3.061
	SRR3591712	Green floral bud	6.776
	SRR3591713	Yellow flower	1.252
SRP173429	SRR8316895	Juvenile bud stage	4.656
	SRR8316896	Juvenile bud stage	5.704
	SRR8316897	Juvenile bud stage	5.339
	SRR8316894	Third green stage	4.603
	SRR8316900	Third green stage	13.593
	SRR8316901	Third green stage	9.598
	SRR8316898	Complete white stage	3.331
	SRR8316899	Complete white stage	12.332
	SRR8316903	Complete white stage	4.946
	SRR8316902	Silver flowering stage	3.583
	SRR8316904	Silver flowering stage	6.772
	SRR8316905	Silver flowering stage	3.525
	SRR8316906	Gold flowering stage	5.624
	SRR8316907	Gold flowering stage	7.046
	SRR8316908	Gold flowering stage	9.340
SRP132670	SRR6706286	Control	6.749
	SRR6706287	Light intensity 50%	6.985
	SRR6706288	Light intensity 20%	8.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.056
	CNS0095593	Slightly white alabastrum(diploid) 2	4.672
	CNS0095594	Slightly white alabastrum(diploid) 3	2.457
	CNS0095595	Whole white alabastrum(diploid) 2	4.850
	CNS0095596	Whole white alabastrum(diploid) 3	3.583
	CNS0095597	Whole white alabastrum(diploid) 4	3.030
	CNS0095598	Silvery flower (diploied) 1	6.751
	CNS0095599	Silvery flower (diploied) 2	5.344
	CNS0095600	Silvery flower (diploied) 3	7.933
	CNS0095601	Golden flower (diploid) 1	3.663
	CNS0095602	Golden flower (diploid) 2	7.020
	CNS0095603	Golden flower (diploid) 3	6.169
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.621
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.284
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.838
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.498
	CNS0095610	Silvery flower (tetraploid) 1	8.089
	CNS0095611	Silvery flower (tetraploid) 2	9.152
	CNS0095612	Silvery flower (tetraploid) 3	6.149
	CNS0095613	Golden flower (tetraploid) 1	1.597
	CNS0095614	Golden flower (tetraploid) 2	6.043
	CNS0095615	Golden flower (tetraploid) 3	3.230
CRA001975	CRR073297	Stem 1	6.723
	CRR073298	Stem 2	8.437
	CRR073299	Stem 3	7.191
	CRR073300	Leaf 1	8.022
	CRR073301	Leaf 2	7.006
	CRR073302	Leaf 3	6.283
	CRR073303	Juvenile bud 1	3.295
	CRR073304	Juvenile bud 2	1.389
	CRR073305	Juvenile bud 3	3.961
	CRR073306	Third green 1	2.168
	CRR073307	Third green 2	2.378
	CRR073308	Third green 3	2.604
	CRR073309	Second white 1	1.071
	CRR073310	Second white 2	2.063
	CRR073311	Second white 3	1.457
	CRR073312	Silver flowering 1	0.914
	CRR073313	Silver flowering 2	0.840
	CRR073314	Silver flowering 3	2.029
	CRR073315	Gold flowering 1	3.438
	CRR073316	Gold flowering 2	6.083
	CRR073317	Gold flowering 3	5.477
	CRR073318	Tawny withering 1	0.899
	CRR073319	Tawny withering 2	0.229
	CRR073320	Tawny withering 3	0.157