Detail information of GWHGAAZE023582


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006361250.10PREDICTED: disease resistance protein RPM1-like [Solanum tuberosum]
COGNP_484168.13E-10hypothetical protein alr0124
Swissprottr|Q39214|RPM1_ARATH0Disease resistance protein RPM1
trEMBLtr|M1BL12|M1BL12_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400047578}
TAIR10AT3G07040.10NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1533679315340713-
GWHAAZE00000007mRNA1533679315340713-
GWHAAZE00000007exon1533679315339164-
GWHAAZE00000007exon1534029015340713-
GWHAAZE00000007CDS1534029015340713-
GWHAAZE00000007CDS1533679315339164-
Transcript Sequence

Network for GWHGAAZE023582

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18052.2Rx_N6856.50E-16
PF00931.23NB-ARC1764227.60E-62
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13457RPM1, RPS3 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.496
SRR3591706second leaf4.753
SRR3591707mature leaf6.653
SRR3591708Shoot apex6.076
SRR3591709Stem4.408
SRR3591710White floral bud1.310
SRR3591711White flower1.106
SRR3591712Green floral bud2.967
SRR3591713Yellow flower0.260
SRP173429 SRR8316895Juvenile bud stage 1.772
SRR8316896Juvenile bud stage 2.456
SRR8316897Juvenile bud stage 0.332
SRR8316894Third green stage 0.995
SRR8316900Third green stage 3.901
SRR8316901Third green stage 2.160
SRR8316898Complete white stage 1.103
SRR8316899Complete white stage 3.465
SRR8316903Complete white stage 1.581
SRR8316902Silver flowering stage1.035
SRR8316904Silver flowering stage1.297
SRR8316905Silver flowering stage1.023
SRR8316906Gold flowering stage 1.461
SRR8316907Gold flowering stage 1.888
SRR8316908Gold flowering stage 1.407
SRP132670SRR6706286Control1.479
SRR6706287Light intensity 50%1.401
SRR6706288Light intensity 20%1.811
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.075
CNS0095593Slightly white alabastrum(diploid) 21.821
CNS0095594Slightly white alabastrum(diploid) 32.776
CNS0095595Whole white alabastrum(diploid) 22.145
CNS0095596Whole white alabastrum(diploid) 32.043
CNS0095597Whole white alabastrum(diploid) 41.897
CNS0095598Silvery flower (diploied) 13.060
CNS0095599Silvery flower (diploied) 24.056
CNS0095600Silvery flower (diploied) 32.601
CNS0095601Golden flower (diploid) 14.263
CNS0095602Golden flower (diploid) 22.897
CNS0095603Golden flower (diploid) 33.191
CNS0095604Slightly white alabastrum(tetraploid) 11.589
CNS0095605Slightly white alabastrum(tetraploid) 21.194
CNS0095606Slightly white alabastrum(tetraploid) 34.504
CNS0095607Whole white alabastrum(tetraploid) 10.866
CNS0095608Whole white alabastrum(tetraploid) 20.512
CNS0095609Whole white alabastrum(tetraploid) 32.900
CNS0095610Silvery flower (tetraploid) 11.927
CNS0095611Silvery flower (tetraploid) 22.117
CNS0095612Silvery flower (tetraploid) 31.343
CNS0095613Golden flower (tetraploid) 10.349
CNS0095614Golden flower (tetraploid) 21.242
CNS0095615Golden flower (tetraploid) 30.441
CRA001975CRR073297Stem 13.153
CRR073298Stem 22.102
CRR073299Stem 31.780
CRR073300Leaf 12.858
CRR073301Leaf 22.702
CRR073302Leaf 32.829
CRR073303Juvenile bud 13.124
CRR073304Juvenile bud 21.125
CRR073305Juvenile bud 32.347
CRR073306Third green 11.431
CRR073307Third green 20.554
CRR073308Third green 30.732
CRR073309Second white 11.315
CRR073310Second white 21.037
CRR073311Second white 31.371
CRR073312Silver flowering 10.397
CRR073313Silver flowering 20.481
CRR073314Silver flowering 30.233
CRR073315Gold flowering 10.481
CRR073316Gold flowering 20.421
CRR073317Gold flowering 30.449
CRR073318Tawny withering 10.444
CRR073319Tawny withering 20.307
CRR073320Tawny withering 30.168