Detail information of GWHGAAZE023562


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268803.10PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like [Vitis vinifera]
COGYP_002297234.13E-173class III aminotransferase
Swissprottr|Q84P54|GATP1_SOLLC0Gamma aminobutyrate transaminase 1, mitochondrial (Precursor)
trEMBLtr|A0A0A0KVA1|A0A0A0KVA1_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN53495.1}
TAIR10AT3G22200.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1412551314133973-
GWHAAZE00000007mRNA1412551314133973-
GWHAAZE00000007exon1412551314125611-
GWHAAZE00000007exon1412591514126030-
GWHAAZE00000007exon1412616514126243-
GWHAAZE00000007exon1412634514126435-
GWHAAZE00000007exon1412748014127558-
GWHAAZE00000007exon1412763814127725-
GWHAAZE00000007exon1412782414127907-
GWHAAZE00000007exon1412822114128268-
GWHAAZE00000007exon1412886614128940-
GWHAAZE00000007exon1412904414129120-
GWHAAZE00000007exon1412953014129618-
GWHAAZE00000007exon1412970614129744-
GWHAAZE00000007exon1412984514129918-
GWHAAZE00000007exon1413092514131017-
GWHAAZE00000007exon1413110714131204-
GWHAAZE00000007exon1413248314132555-
GWHAAZE00000007exon1413281014132894-
GWHAAZE00000007exon1413327914133418-
GWHAAZE00000007exon1413389614133973-
GWHAAZE00000007CDS1413389614133973-
GWHAAZE00000007CDS1413327914133418-
GWHAAZE00000007CDS1413281014132894-
GWHAAZE00000007CDS1413248314132555-
GWHAAZE00000007CDS1413110714131204-
GWHAAZE00000007CDS1413092514131017-
GWHAAZE00000007CDS1412984514129918-
GWHAAZE00000007CDS1412970614129744-
GWHAAZE00000007CDS1412953014129618-
GWHAAZE00000007CDS1412904414129120-
GWHAAZE00000007CDS1412886614128940-
GWHAAZE00000007CDS1412822114128268-
GWHAAZE00000007CDS1412782414127907-
GWHAAZE00000007CDS1412763814127725-
GWHAAZE00000007CDS1412748014127558-
GWHAAZE00000007CDS1412634514126435-
GWHAAZE00000007CDS1412616514126243-
GWHAAZE00000007CDS1412591514126030-
GWHAAZE00000007CDS1412551314125611-
Transcript Sequence

Network for GWHGAAZE023562

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.22Aminotran_3945021.00E-85
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16871POP2 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.046
SRR3591706second leaf0.000
SRR3591707mature leaf0.005
SRR3591708Shoot apex0.018
SRR3591709Stem0.241
SRR3591710White floral bud2.394
SRR3591711White flower0.000
SRR3591712Green floral bud4.410
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.967
SRR8316896Juvenile bud stage 6.158
SRR8316897Juvenile bud stage 1.070
SRR8316894Third green stage 2.642
SRR8316900Third green stage 4.592
SRR8316901Third green stage 6.459
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.057
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.006
SRR8316904Silver flowering stage0.021
SRR8316905Silver flowering stage0.055
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.771
SRR6706287Light intensity 50%1.852
SRR6706288Light intensity 20%1.940
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.661
CNS0095593Slightly white alabastrum(diploid) 23.829
CNS0095594Slightly white alabastrum(diploid) 36.901
CNS0095595Whole white alabastrum(diploid) 25.390
CNS0095596Whole white alabastrum(diploid) 35.486
CNS0095597Whole white alabastrum(diploid) 44.753
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.106
CNS0095600Silvery flower (diploied) 30.041
CNS0095601Golden flower (diploid) 10.137
CNS0095602Golden flower (diploid) 20.078
CNS0095603Golden flower (diploid) 30.083
CNS0095604Slightly white alabastrum(tetraploid) 17.457
CNS0095605Slightly white alabastrum(tetraploid) 26.999
CNS0095606Slightly white alabastrum(tetraploid) 30.081
CNS0095607Whole white alabastrum(tetraploid) 17.407
CNS0095608Whole white alabastrum(tetraploid) 27.800
CNS0095609Whole white alabastrum(tetraploid) 37.434
CNS0095610Silvery flower (tetraploid) 10.034
CNS0095611Silvery flower (tetraploid) 20.053
CNS0095612Silvery flower (tetraploid) 30.534
CNS0095613Golden flower (tetraploid) 10.038
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.302
CRA001975CRR073297Stem 12.042
CRR073298Stem 21.564
CRR073299Stem 31.664
CRR073300Leaf 13.515
CRR073301Leaf 21.699
CRR073302Leaf 32.454
CRR073303Juvenile bud 12.207
CRR073304Juvenile bud 22.950
CRR073305Juvenile bud 30.027
CRR073306Third green 10.494
CRR073307Third green 20.538
CRR073308Third green 30.304
CRR073309Second white 10.000
CRR073310Second white 20.112
CRR073311Second white 30.013
CRR073312Silver flowering 10.539
CRR073313Silver flowering 20.942
CRR073314Silver flowering 30.066
CRR073315Gold flowering 11.715
CRR073316Gold flowering 20.095
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.149
CRR073319Tawny withering 20.358
CRR073320Tawny withering 30.469