Detail information of GWHGAAZE023559


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008451896.10PREDICTED: gamma aminobutyrate transaminase 1, mitochondrial-like isoform X2 [Cucumis melo]
COGYP_002297234.12E-171class III aminotransferase
Swissprottr|Q84P54|GATP1_SOLLC0Gamma aminobutyrate transaminase 1, mitochondrial (Precursor)
trEMBLtr|A0A0A0KVA1|A0A0A0KVA1_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN53495.1}
TAIR10AT3G22200.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1392539313933279-
GWHAAZE00000007mRNA1392539313933279-
GWHAAZE00000007exon1392539313925491-
GWHAAZE00000007exon1392579413925909-
GWHAAZE00000007exon1392604413926122-
GWHAAZE00000007exon1392622413926314-
GWHAAZE00000007exon1392735613927434-
GWHAAZE00000007exon1392751413927601-
GWHAAZE00000007exon1392770013927783-
GWHAAZE00000007exon1392809713928144-
GWHAAZE00000007exon1392874513928819-
GWHAAZE00000007exon1392892313928999-
GWHAAZE00000007exon1392940713929495-
GWHAAZE00000007exon1392958313929621-
GWHAAZE00000007exon1392972213929795-
GWHAAZE00000007exon1393080213930894-
GWHAAZE00000007exon1393098413931081-
GWHAAZE00000007exon1393236013932432-
GWHAAZE00000007exon1393268713932794-
GWHAAZE00000007exon1393316313933279-
GWHAAZE00000007CDS1393316313933279-
GWHAAZE00000007CDS1393268713932794-
GWHAAZE00000007CDS1393236013932432-
GWHAAZE00000007CDS1393098413931081-
GWHAAZE00000007CDS1393080213930894-
GWHAAZE00000007CDS1392972213929795-
GWHAAZE00000007CDS1392958313929621-
GWHAAZE00000007CDS1392940713929495-
GWHAAZE00000007CDS1392892313928999-
GWHAAZE00000007CDS1392874513928819-
GWHAAZE00000007CDS1392809713928144-
GWHAAZE00000007CDS1392770013927783-
GWHAAZE00000007CDS1392751413927601-
GWHAAZE00000007CDS1392735613927434-
GWHAAZE00000007CDS1392622413926314-
GWHAAZE00000007CDS1392604413926122-
GWHAAZE00000007CDS1392579413925909-
GWHAAZE00000007CDS1392539313925491-
Transcript Sequence

Network for GWHGAAZE023559

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.22Aminotran_3684769.20E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16871POP2 Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Butanoate metabolismmap00650
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.048
SRR3591706second leaf0.000
SRR3591707mature leaf0.003
SRR3591708Shoot apex0.021
SRR3591709Stem0.054
SRR3591710White floral bud4.026
SRR3591711White flower0.000
SRR3591712Green floral bud4.768
SRR3591713Yellow flower0.168
SRP173429 SRR8316895Juvenile bud stage 2.222
SRR8316896Juvenile bud stage 4.921
SRR8316897Juvenile bud stage 4.267
SRR8316894Third green stage 1.314
SRR8316900Third green stage 2.515
SRR8316901Third green stage 4.006
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.060
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.049
SRR8316904Silver flowering stage0.065
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.765
SRR6706287Light intensity 50%1.656
SRR6706288Light intensity 20%1.686
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.092
CNS0095593Slightly white alabastrum(diploid) 22.938
CNS0095594Slightly white alabastrum(diploid) 34.570
CNS0095595Whole white alabastrum(diploid) 24.825
CNS0095596Whole white alabastrum(diploid) 35.992
CNS0095597Whole white alabastrum(diploid) 44.018
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.118
CNS0095600Silvery flower (diploied) 30.069
CNS0095601Golden flower (diploid) 10.151
CNS0095602Golden flower (diploid) 20.068
CNS0095603Golden flower (diploid) 30.090
CNS0095604Slightly white alabastrum(tetraploid) 112.683
CNS0095605Slightly white alabastrum(tetraploid) 211.729
CNS0095606Slightly white alabastrum(tetraploid) 30.082
CNS0095607Whole white alabastrum(tetraploid) 113.336
CNS0095608Whole white alabastrum(tetraploid) 213.933
CNS0095609Whole white alabastrum(tetraploid) 38.703
CNS0095610Silvery flower (tetraploid) 10.023
CNS0095611Silvery flower (tetraploid) 20.343
CNS0095612Silvery flower (tetraploid) 30.839
CNS0095613Golden flower (tetraploid) 10.085
CNS0095614Golden flower (tetraploid) 20.043
CNS0095615Golden flower (tetraploid) 30.161
CRA001975CRR073297Stem 11.115
CRR073298Stem 21.640
CRR073299Stem 31.304
CRR073300Leaf 11.254
CRR073301Leaf 21.490
CRR073302Leaf 31.768
CRR073303Juvenile bud 10.769
CRR073304Juvenile bud 21.369
CRR073305Juvenile bud 30.086
CRR073306Third green 10.204
CRR073307Third green 21.151
CRR073308Third green 30.126
CRR073309Second white 10.078
CRR073310Second white 20.294
CRR073311Second white 30.014
CRR073312Silver flowering 10.630
CRR073313Silver flowering 20.410
CRR073314Silver flowering 30.249
CRR073315Gold flowering 10.619
CRR073316Gold flowering 20.100
CRR073317Gold flowering 30.329
CRR073318Tawny withering 10.183
CRR073319Tawny withering 20.658
CRR073320Tawny withering 30.120