Detail information of GWHGAAZE023533


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009796688.10PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Nicotiana sylvestris]
COGYP_007042205.19E-114putative 4-coumarate-CoA ligase 3
Swissprottr|Q84P24|4CLL6_ARATH04-coumarate--CoA ligase-like 6
trEMBLtr|K4CMZ3|K4CMZ3_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g076300.2.1}
TAIR10AT4G19010.10AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1258258312588568-
GWHAAZE00000007mRNA1258258312588568-
GWHAAZE00000007exon1258258312582696-
GWHAAZE00000007exon1258306412583166-
GWHAAZE00000007exon1258418412584251-
GWHAAZE00000007exon1258449512584640-
GWHAAZE00000007exon1258595612586145-
GWHAAZE00000007exon1258748012588568-
GWHAAZE00000007CDS1258748012588568-
GWHAAZE00000007CDS1258595612586145-
GWHAAZE00000007CDS1258449512584640-
GWHAAZE00000007CDS1258418412584251-
GWHAAZE00000007CDS1258306412583166-
GWHAAZE00000007CDS1258258312582696-
Transcript Sequence

Network for GWHGAAZE023533

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding614712.40E-98
PF13193.7AMP-binding_C4815552.10E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.088
SRR3591706second leaf1.093
SRR3591707mature leaf0.513
SRR3591708Shoot apex4.242
SRR3591709Stem0.419
SRR3591710White floral bud1.007
SRR3591711White flower0.972
SRR3591712Green floral bud4.577
SRR3591713Yellow flower0.801
SRP173429 SRR8316895Juvenile bud stage 18.154
SRR8316896Juvenile bud stage 28.989
SRR8316897Juvenile bud stage 10.215
SRR8316894Third green stage 6.152
SRR8316900Third green stage 10.649
SRR8316901Third green stage 11.751
SRR8316898Complete white stage 0.478
SRR8316899Complete white stage 2.122
SRR8316903Complete white stage 0.511
SRR8316902Silver flowering stage0.325
SRR8316904Silver flowering stage0.402
SRR8316905Silver flowering stage0.106
SRR8316906Gold flowering stage 1.198
SRR8316907Gold flowering stage 1.069
SRR8316908Gold flowering stage 1.587
SRP132670SRR6706286Control5.190
SRR6706287Light intensity 50%4.749
SRR6706288Light intensity 20%4.710
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.359
CNS0095593Slightly white alabastrum(diploid) 210.156
CNS0095594Slightly white alabastrum(diploid) 322.410
CNS0095595Whole white alabastrum(diploid) 26.621
CNS0095596Whole white alabastrum(diploid) 39.785
CNS0095597Whole white alabastrum(diploid) 46.360
CNS0095598Silvery flower (diploied) 11.470
CNS0095599Silvery flower (diploied) 20.861
CNS0095600Silvery flower (diploied) 31.786
CNS0095601Golden flower (diploid) 11.293
CNS0095602Golden flower (diploid) 21.290
CNS0095603Golden flower (diploid) 30.843
CNS0095604Slightly white alabastrum(tetraploid) 113.856
CNS0095605Slightly white alabastrum(tetraploid) 211.883
CNS0095606Slightly white alabastrum(tetraploid) 33.819
CNS0095607Whole white alabastrum(tetraploid) 16.796
CNS0095608Whole white alabastrum(tetraploid) 24.798
CNS0095609Whole white alabastrum(tetraploid) 38.995
CNS0095610Silvery flower (tetraploid) 12.688
CNS0095611Silvery flower (tetraploid) 23.348
CNS0095612Silvery flower (tetraploid) 32.616
CNS0095613Golden flower (tetraploid) 11.106
CNS0095614Golden flower (tetraploid) 21.237
CNS0095615Golden flower (tetraploid) 30.170
CRA001975CRR073297Stem 114.064
CRR073298Stem 210.327
CRR073299Stem 314.524
CRR073300Leaf 15.995
CRR073301Leaf 25.660
CRR073302Leaf 35.703
CRR073303Juvenile bud 12.864
CRR073304Juvenile bud 22.501
CRR073305Juvenile bud 32.845
CRR073306Third green 10.469
CRR073307Third green 20.530
CRR073308Third green 30.306
CRR073309Second white 10.673
CRR073310Second white 20.677
CRR073311Second white 30.296
CRR073312Silver flowering 10.429
CRR073313Silver flowering 20.471
CRR073314Silver flowering 30.088
CRR073315Gold flowering 14.788
CRR073316Gold flowering 24.766
CRR073317Gold flowering 32.113
CRR073318Tawny withering 11.225
CRR073319Tawny withering 21.784
CRR073320Tawny withering 31.113