Gene detail

Detail information of GWHGAAZE023529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004510995.1	1.9772E-112	PREDICTED: transcriptional regulator ATRX homolog [Cicer arietinum]
COG	YP_007701905.1	4E-13	putative ATP-dependent helicase
Swissprot	tr\|Q9LK10\|CLSY4_ARATH	2E-30	SNF2 domain-containing protein CLASSY 4
trEMBL	tr\|D7L1V4\|D7L1V4_ARALL	2E-127	Defective in RNA-directed DNA methylation 1 {ECO:0000313\|EMBL:EFH60429.1}
TAIR10	AT2G16390.1	8E-69	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	12349435	12352690	+
GWHAAZE00000007	mRNA	12349435	12352690	+
GWHAAZE00000007	exon	12349435	12349757	+
GWHAAZE00000007	exon	12350330	12350472	+
GWHAAZE00000007	exon	12350653	12350907	+
GWHAAZE00000007	exon	12352156	12352579	+
GWHAAZE00000007	exon	12352687	12352690	+
GWHAAZE00000007	CDS	12349435	12349757	+
GWHAAZE00000007	CDS	12350330	12350472	+
GWHAAZE00000007	CDS	12350653	12350907	+
GWHAAZE00000007	CDS	12352156	12352579	+
GWHAAZE00000007	CDS	12352687	12352690	+

Transcript Sequence
>GWHTAAZE023559 ATGAAGCCGCACCAAGTCGAGGGTTTTAATTTTCTACTAAGCAACTTGGTGACAGATAACCCAGGGGGTTGCATCCTGGCCCATGCTCCTGGATCGGGCAAAACCTTTATGATCATCAGCTTTATTCAGAGCTTCATGGCAAAGTACCCCTCTGCAAGACCGCTCGTGGTGCTACCGAGAGGAATCTTGCCCACCTGGAAGAAAGAATTTCACAGATGGCAGGTCGAGGACATTCCTTTATACTCTGTAAAAGCCGATGGCCGGTCTCAACAGCTCGAAGTGCTCAAACAATGGGTAGCCAAGAGGAGCATTCTGTTTCTTGGGACCGCAGCTGCTTGTCAGGAGATCCTCTTAACTTACCCTTCTATACTTATTCTCGATGAAGGCCACACCCCTAGAAACCAGGATACTGATGTCCTCTCCTCCCTTGAAAAAGTCCAAACACCTCGAAAAGTTGTACTTTCGGAGCACACTCTGTTGAAAGACGATAATTTCAAGAGAAAGTCGACTGTAATTCAAGATCTTCGAGAGATGACGAGCAAGGTTCTTCATTATTACAAGGGCGATTTTCTTGATGAACTCCCTGGGCTGGTTGACTTCACCGTGTTTCTCAATCTTAGCCCTTCACAAAAACGCGGGGTTTCTGAGTTGAAAAAGGTTGGTAGAAAATTCAAGATAAGTTCTGACGGAAGTGCACTATATGTGCATCCTCAGCTCAAAAGTGATTCAGATTCAGATGTTAGAGAATCGTCAATGGATCGCTTCAACAATTCTTCAGATGCTAGAGTATTCTTTGGATCGATAAAAGCGTGCGGTGAAGGGATATCTCTTGTTGGGGCTTCAAGGATAATCATTCTAGACGTGCATTTGAACCCTTCGGTTACCCGCCAAGCAATCGGGCGGGCATTCCGGCCGGGTCAGGAGAAGAAGGTATATACTTACAGATTGGTTGCAGCAGGTTCACCCGAAGAGGAGGACCACTCCACTTGCTTCAAAAAAGAATCTATTGCCAAGATGTGGTTCGAGTGGAATGAGTATTGTGGCCACCTCAACTTCGAAATGGAGACTGCTAACGTTAAGGATTGCGGTGACATTTTTTTGGAAACTCCATGGTTAAATGAAGATGTAATTTCATTATACAAGAGGTAA

Network for GWHGAAZE023529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	21	155	2.60E-11
PF00271.32	Helicase_C	239	305	6.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.997
	SRR3591706	second leaf	4.118
	SRR3591707	mature leaf	1.649
	SRR3591708	Shoot apex	8.244
	SRR3591709	Stem	6.466
	SRR3591710	White floral bud	2.254
	SRR3591711	White flower	2.028
	SRR3591712	Green floral bud	8.118
	SRR3591713	Yellow flower	0.695
SRP173429	SRR8316895	Juvenile bud stage	8.068
	SRR8316896	Juvenile bud stage	10.636
	SRR8316897	Juvenile bud stage	5.155
	SRR8316894	Third green stage	3.422
	SRR8316900	Third green stage	10.272
	SRR8316901	Third green stage	8.202
	SRR8316898	Complete white stage	0.963
	SRR8316899	Complete white stage	9.093
	SRR8316903	Complete white stage	1.339
	SRR8316902	Silver flowering stage	0.289
	SRR8316904	Silver flowering stage	0.411
	SRR8316905	Silver flowering stage	0.100
	SRR8316906	Gold flowering stage	0.182
	SRR8316907	Gold flowering stage	0.270
	SRR8316908	Gold flowering stage	0.384
SRP132670	SRR6706286	Control	6.045
	SRR6706287	Light intensity 50%	6.930
	SRR6706288	Light intensity 20%	7.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.104
	CNS0095593	Slightly white alabastrum(diploid) 2	9.787
	CNS0095594	Slightly white alabastrum(diploid) 3	9.567
	CNS0095595	Whole white alabastrum(diploid) 2	9.463
	CNS0095596	Whole white alabastrum(diploid) 3	7.091
	CNS0095597	Whole white alabastrum(diploid) 4	7.148
	CNS0095598	Silvery flower (diploied) 1	5.470
	CNS0095599	Silvery flower (diploied) 2	6.633
	CNS0095600	Silvery flower (diploied) 3	2.490
	CNS0095601	Golden flower (diploid) 1	5.692
	CNS0095602	Golden flower (diploid) 2	2.235
	CNS0095603	Golden flower (diploid) 3	2.821
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.494
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.855
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.218
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.435
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.143
	CNS0095610	Silvery flower (tetraploid) 1	1.580
	CNS0095611	Silvery flower (tetraploid) 2	1.980
	CNS0095612	Silvery flower (tetraploid) 3	1.765
	CNS0095613	Golden flower (tetraploid) 1	0.627
	CNS0095614	Golden flower (tetraploid) 2	1.043
	CNS0095615	Golden flower (tetraploid) 3	0.138
CRA001975	CRR073297	Stem 1	10.976
	CRR073298	Stem 2	9.124
	CRR073299	Stem 3	9.162
	CRR073300	Leaf 1	11.327
	CRR073301	Leaf 2	11.813
	CRR073302	Leaf 3	7.868
	CRR073303	Juvenile bud 1	7.980
	CRR073304	Juvenile bud 2	4.613
	CRR073305	Juvenile bud 3	7.122
	CRR073306	Third green 1	0.233
	CRR073307	Third green 2	0.175
	CRR073308	Third green 3	0.225
	CRR073309	Second white 1	0.328
	CRR073310	Second white 2	0.307
	CRR073311	Second white 3	0.198
	CRR073312	Silver flowering 1	0.188
	CRR073313	Silver flowering 2	0.278
	CRR073314	Silver flowering 3	0.119
	CRR073315	Gold flowering 1	2.972
	CRR073316	Gold flowering 2	6.767
	CRR073317	Gold flowering 3	3.108
	CRR073318	Tawny withering 1	6.314
	CRR073319	Tawny withering 2	6.226
	CRR073320	Tawny withering 3	5.594