Detail information of GWHGAAZE023528


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009757870.12.20748E-34PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Nicotiana sylvestris]
trEMBLtr|M1D1X5|M1D1X5_SOLTU4E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079490}
TAIR10AT2G16390.13E-20SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1234501612347552+
GWHAAZE00000007mRNA1234501612347552+
GWHAAZE00000007exon1234501612345219+
GWHAAZE00000007exon1234735212347552+
GWHAAZE00000007CDS1234501612345219+
GWHAAZE00000007CDS1234735212347552+
Transcript Sequence

Network for GWHGAAZE023528

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10875RAD54L, RAD54 Homologous recombination map03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.634
SRR3591706second leaf2.774
SRR3591707mature leaf1.640
SRR3591708Shoot apex7.175
SRR3591709Stem6.010
SRR3591710White floral bud1.359
SRR3591711White flower1.833
SRR3591712Green floral bud5.599
SRR3591713Yellow flower0.507
SRP173429 SRR8316895Juvenile bud stage 7.511
SRR8316896Juvenile bud stage 6.746
SRR8316897Juvenile bud stage 2.213
SRR8316894Third green stage 4.540
SRR8316900Third green stage 5.303
SRR8316901Third green stage 5.372
SRR8316898Complete white stage 0.462
SRR8316899Complete white stage 4.715
SRR8316903Complete white stage 1.499
SRR8316902Silver flowering stage0.326
SRR8316904Silver flowering stage0.200
SRR8316905Silver flowering stage0.159
SRR8316906Gold flowering stage 0.158
SRR8316907Gold flowering stage 1.585
SRR8316908Gold flowering stage 0.491
SRP132670SRR6706286Control1.845
SRR6706287Light intensity 50%1.649
SRR6706288Light intensity 20%2.310
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.298
CNS0095593Slightly white alabastrum(diploid) 22.709
CNS0095594Slightly white alabastrum(diploid) 32.174
CNS0095595Whole white alabastrum(diploid) 21.627
CNS0095596Whole white alabastrum(diploid) 32.249
CNS0095597Whole white alabastrum(diploid) 41.909
CNS0095598Silvery flower (diploied) 11.835
CNS0095599Silvery flower (diploied) 23.177
CNS0095600Silvery flower (diploied) 32.236
CNS0095601Golden flower (diploid) 11.880
CNS0095602Golden flower (diploid) 22.275
CNS0095603Golden flower (diploid) 31.681
CNS0095604Slightly white alabastrum(tetraploid) 12.860
CNS0095605Slightly white alabastrum(tetraploid) 22.874
CNS0095606Slightly white alabastrum(tetraploid) 39.366
CNS0095607Whole white alabastrum(tetraploid) 13.367
CNS0095608Whole white alabastrum(tetraploid) 20.758
CNS0095609Whole white alabastrum(tetraploid) 36.312
CNS0095610Silvery flower (tetraploid) 12.586
CNS0095611Silvery flower (tetraploid) 23.057
CNS0095612Silvery flower (tetraploid) 30.580
CNS0095613Golden flower (tetraploid) 10.130
CNS0095614Golden flower (tetraploid) 20.184
CNS0095615Golden flower (tetraploid) 30.883
CRA001975CRR073297Stem 14.962
CRR073298Stem 27.836
CRR073299Stem 34.238
CRR073300Leaf 16.904
CRR073301Leaf 23.194
CRR073302Leaf 32.446
CRR073303Juvenile bud 14.122
CRR073304Juvenile bud 23.782
CRR073305Juvenile bud 32.898
CRR073306Third green 10.000
CRR073307Third green 20.449
CRR073308Third green 30.097
CRR073309Second white 10.000
CRR073310Second white 20.205
CRR073311Second white 30.540
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.557
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.880
CRR073316Gold flowering 27.670
CRR073317Gold flowering 31.945
CRR073318Tawny withering 12.345
CRR073319Tawny withering 24.010
CRR073320Tawny withering 34.069