Detail information of GWHGAAZE023527


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008237010.11.54478E-12PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Prunus mume]
trEMBLtr|F6GU58|F6GU58_VITVI5E-13Putative uncharacterized protein {ECO:0000313|EMBL:CCB43374.1}
TAIR10AT2G16390.10.00000003SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene1233612912336578+
GWHAAZE00000007mRNA1233612912336578+
GWHAAZE00000007exon1233612912336578+
GWHAAZE00000007CDS1233612912336578+
Transcript Sequence

Network for GWHGAAZE023527

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10875RAD54L, RAD54 Homologous recombination map03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.491
SRR3591706second leaf2.659
SRR3591707mature leaf1.584
SRR3591708Shoot apex5.215
SRR3591709Stem3.323
SRR3591710White floral bud2.105
SRR3591711White flower1.218
SRR3591712Green floral bud4.053
SRR3591713Yellow flower0.940
SRP173429 SRR8316895Juvenile bud stage 5.161
SRR8316896Juvenile bud stage 6.056
SRR8316897Juvenile bud stage 1.600
SRR8316894Third green stage 2.553
SRR8316900Third green stage 7.959
SRR8316901Third green stage 5.378
SRR8316898Complete white stage 0.925
SRR8316899Complete white stage 4.193
SRR8316903Complete white stage 1.004
SRR8316902Silver flowering stage0.318
SRR8316904Silver flowering stage0.084
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.838
SRR8316908Gold flowering stage 0.482
SRP132670SRR6706286Control6.300
SRR6706287Light intensity 50%6.500
SRR6706288Light intensity 20%6.729
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.278
CNS0095593Slightly white alabastrum(diploid) 21.989
CNS0095594Slightly white alabastrum(diploid) 30.565
CNS0095595Whole white alabastrum(diploid) 21.438
CNS0095596Whole white alabastrum(diploid) 32.052
CNS0095597Whole white alabastrum(diploid) 42.051
CNS0095598Silvery flower (diploied) 13.680
CNS0095599Silvery flower (diploied) 23.378
CNS0095600Silvery flower (diploied) 32.226
CNS0095601Golden flower (diploid) 11.886
CNS0095602Golden flower (diploid) 21.729
CNS0095603Golden flower (diploid) 31.443
CNS0095604Slightly white alabastrum(tetraploid) 11.744
CNS0095605Slightly white alabastrum(tetraploid) 21.486
CNS0095606Slightly white alabastrum(tetraploid) 37.403
CNS0095607Whole white alabastrum(tetraploid) 10.610
CNS0095608Whole white alabastrum(tetraploid) 21.464
CNS0095609Whole white alabastrum(tetraploid) 37.184
CNS0095610Silvery flower (tetraploid) 11.117
CNS0095611Silvery flower (tetraploid) 21.763
CNS0095612Silvery flower (tetraploid) 31.194
CNS0095613Golden flower (tetraploid) 10.083
CNS0095614Golden flower (tetraploid) 20.755
CNS0095615Golden flower (tetraploid) 30.329
CRA001975CRR073297Stem 13.056
CRR073298Stem 24.297
CRR073299Stem 33.310
CRR073300Leaf 15.793
CRR073301Leaf 23.364
CRR073302Leaf 37.045
CRR073303Juvenile bud 15.294
CRR073304Juvenile bud 23.542
CRR073305Juvenile bud 32.944
CRR073306Third green 10.000
CRR073307Third green 20.422
CRR073308Third green 30.208
CRR073309Second white 10.813
CRR073310Second white 20.409
CRR073311Second white 30.225
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.163
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.985
CRR073316Gold flowering 27.314
CRR073317Gold flowering 34.490
CRR073318Tawny withering 12.517
CRR073319Tawny withering 21.893
CRR073320Tawny withering 30.964