Gene detail

Detail information of GWHGAAZE023518

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099413.1	0	PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 [Sesamum indicum]
Swissprot	tr\|Q38914\|ANT_ARATH	1E-142	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|K4BD02\|K4BD02_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g092050.2.1}
TAIR10	AT4G37750.1	7E-99	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	11281303	11284569	+
GWHAAZE00000007	mRNA	11281303	11284569	+
GWHAAZE00000007	exon	11281303	11281467	+
GWHAAZE00000007	exon	11281571	11282117	+
GWHAAZE00000007	exon	11282497	11282579	+
GWHAAZE00000007	exon	11282828	11282916	+
GWHAAZE00000007	exon	11282996	11283069	+
GWHAAZE00000007	exon	11283156	11283206	+
GWHAAZE00000007	exon	11283304	11283380	+
GWHAAZE00000007	exon	11284067	11284569	+
GWHAAZE00000007	five_prime_UTR	11281303	11281310	+
GWHAAZE00000007	CDS	11281311	11281467	+
GWHAAZE00000007	CDS	11281571	11282117	+
GWHAAZE00000007	CDS	11282497	11282579	+
GWHAAZE00000007	CDS	11282828	11282916	+
GWHAAZE00000007	CDS	11282996	11283069	+
GWHAAZE00000007	CDS	11283156	11283206	+
GWHAAZE00000007	CDS	11283304	11283380	+
GWHAAZE00000007	CDS	11284067	11284569	+

Transcript Sequence
>GWHTAAZE023548 AGAACAACATGGAGGGTCCTTCAGAATCAGCCCCTTCTCATTTCAACTACTCTCCCTTTTACTGTGAGGGTGAAAATGGTGGCTTTCACTGTCTTTTGCCCCTAAAATCTGATGGCTCACTCTGCATAATGCACCCTCAATCTTTACCAAGGTCTCACCCACAAGGGATGGTAAATTCAACACCAAAACTGGAGGACTTCTTTGGTGGAGCAACAATGGGGACCCATCAGTATGAAAACAGTGACAGAGAAGGTATGGCTCTTAGTAACCAAGATTTCTTGAATCTTCACCAACAGAGCCCGAGGCATCAGCAACAGCAGATTCTTGCCCAAGAATACCCAAATTACCCTCCATTTAAGGAGTCCAATGAAACCCATCTTTCAAATTGCAATCTTGAGCTCCCGACAATGGCTCCTGATGATGAAATCTGTGACTTAAAGAGTTGGGTTTCAAGAAACTACACAAATGGTAAATGGGGTCAAAGTGGGGATGAATGTGGGCCCCTTGGTTCAACGGGTTTTGGGGATATGCAGTCTTTGAGCTTGTCTATGAGCCCTGGTTCTCAATCAACCAGCTGTGGTACATTGGCTGATTGTGTGCCCATTGATACCAAGAAAAGAGGGTCTGAAAAGATGGATCAGAAGCAGATCACTCAAAGGAAGTCTATTGACACATTTGGGCAGAGGACTTCTTTGTATAGAGGTGTTACAAGGCATAGGTGGACAGGGAGGTATGAAGCCCATTTATGGGACAATAGTTGCAAGAAAGAAGGGCAGACCCGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAGGCAGCAAGAGCATACGATTTAGCAGCAATCAAATACTGGGGTTCTTCGACACATATTAATTTTCCGGTGGAAAATTATCGACAAGAAATTGAACAAATGAAGAACATGAACAGACAAGAATATGTTGCATACTTAAGAAGGAGAAGCAGTGGCTTCTCTAGGGGAGCTTCAATTTACAGAGGAGTAACAAGACATCATCAACATGGTCGATGGCAGGCTCGGATCGGCCGAGTCGCTGGGAACAAGGATCTCTATTTAGGCACATTTAGCACCCAAGAGGAAGCAGCCGAGGCCTATGACGTAGCAGCAATAAAATTCCGCGGTGTAAACGCAGTAACAAATTTTGACATATCAATGTACGCGGTGGAGCGTATAATGGCAAGCAATACCCTTCTTGCTGGGGAGCTGGCCAAGCGAAAAAATGAGCTAGAAGAATCCACAACTGAGAAAGCCAATGGCTCAAAAGAGCACAATGGAAGTGTATCAAATTGGAAAATGGCCCTCTGTGAGCCCTCTCCAAATTTGACTGCAACTGATAAAATGAGCTCGGGTCAGCAAGGAGATGTGCGTATTACAAATGAGATGTCTTTAGTGAGCAGCACAAGAGAAGGCAGCCCAGATAAAAACCAGGGCCCACAGATGCCTATTGCGATGTCCCCATTCGCATCACAGTTTCTTAACAGTTCAACTAGTAACATGAATTCTTGGATTTCAACTGTTCAAGCGAGGCCTACCATGCCGCTTTTTGCTGCATGGGCAGATGCATCATAA

Network for GWHGAAZE023518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	229	284	9.20E-10
PF00847.21	AP2	328	378	2.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.186
	SRR3591706	second leaf	1.214
	SRR3591707	mature leaf	0.050
	SRR3591708	Shoot apex	11.733
	SRR3591709	Stem	2.444
	SRR3591710	White floral bud	3.320
	SRR3591711	White flower	0.845
	SRR3591712	Green floral bud	0.688
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.056
	SRR8316896	Juvenile bud stage	1.055
	SRR8316897	Juvenile bud stage	1.054
	SRR8316894	Third green stage	0.759
	SRR8316900	Third green stage	0.516
	SRR8316901	Third green stage	0.321
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.996
	SRR8316903	Complete white stage	0.221
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.270
	SRR6706287	Light intensity 50%	0.410
	SRR6706288	Light intensity 20%	0.396
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.334
	CNS0095593	Slightly white alabastrum(diploid) 2	1.590
	CNS0095594	Slightly white alabastrum(diploid) 3	1.296
	CNS0095595	Whole white alabastrum(diploid) 2	0.933
	CNS0095596	Whole white alabastrum(diploid) 3	0.671
	CNS0095597	Whole white alabastrum(diploid) 4	0.548
	CNS0095598	Silvery flower (diploied) 1	1.211
	CNS0095599	Silvery flower (diploied) 2	0.868
	CNS0095600	Silvery flower (diploied) 3	0.739
	CNS0095601	Golden flower (diploid) 1	1.031
	CNS0095602	Golden flower (diploid) 2	0.252
	CNS0095603	Golden flower (diploid) 3	0.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.775
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.113
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.319
	CNS0095610	Silvery flower (tetraploid) 1	0.058
	CNS0095611	Silvery flower (tetraploid) 2	0.544
	CNS0095612	Silvery flower (tetraploid) 3	0.411
	CNS0095613	Golden flower (tetraploid) 1	0.027
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.873
	CRR073298	Stem 2	2.423
	CRR073299	Stem 3	2.629
	CRR073300	Leaf 1	0.354
	CRR073301	Leaf 2	0.502
	CRR073302	Leaf 3	0.560
	CRR073303	Juvenile bud 1	0.046
	CRR073304	Juvenile bud 2	0.141
	CRR073305	Juvenile bud 3	0.089
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.037
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.620
	CRR073319	Tawny withering 2	1.856
	CRR073320	Tawny withering 3	5.002