Gene detail

Detail information of GWHGAAZE023499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009362586.1	3.53145E-70	PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Pyrus x bretschneideri]
Swissprot	tr\|Q9FJW4\|NDUS4_ARATH	2E-63	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (Precursor)
trEMBL	tr\|M5W0K2\|M5W0K2_PRUPE	1E-70	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07267.1}
TAIR10	AT5G67590.1	9E-51	NADH-ubiquinone oxidoreductase-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	10701263	10708660	+
GWHAAZE00000007	mRNA	10701263	10708660	+
GWHAAZE00000007	exon	10701263	10701424	+
GWHAAZE00000007	exon	10701565	10701639	+
GWHAAZE00000007	exon	10703123	10703211	+
GWHAAZE00000007	exon	10708139	10708268	+
GWHAAZE00000007	exon	10708438	10708467	+
GWHAAZE00000007	exon	10708601	10708660	+
GWHAAZE00000007	CDS	10701263	10701424	+
GWHAAZE00000007	CDS	10701565	10701639	+
GWHAAZE00000007	CDS	10703123	10703211	+
GWHAAZE00000007	CDS	10708139	10708268	+
GWHAAZE00000007	CDS	10708438	10708467	+
GWHAAZE00000007	CDS	10708601	10708660	+

Transcript Sequence
>GWHTAAZE023529 ATGGCGAGCTCTCTGCTGCGGAACGTTCGACATTCTCGCCCATCCGCCTTAGTTGAATCGTGGAGGAGTAGATGTTTATCCACGGACACGTCTTTAGCTGAGTACAGACGCGGAGAGATCGGAGCAGTCTCTGGTATTCCCGATGAACACCTTCAAAGGAGGTCACTGATTGATGAGCTTTACATGTTAGGGTTTGGTAATGTATTTAGGGCATTTCAGATGGCATCAAGTAATCAGGTTGTAATTTTTTCACCTGCTCGATCTGCTACACAACAGGGATCAGGAAAACTTGGAAAGTGGAAAATCAATTTTGTGTCAACACAGAAATGGGAAAATCCATTGATGGGTTGGACATCCACCGGAGACCCCTATGCTCATGTTGGTGATTCTGCTATGGGTTTTGATAGTGAGCAAGATGCAATAGGATTCGCTGAAAGGCATGGCTGGGATTACACGGTTAAGAAGCGTCAGACACCACTGTTGAAGGTTAGGGCATATGCTGACAACTTCAAGTGGAAGGGTCCTCCACCAACCCAGGAAGCTTGA

Network for GWHGAAZE023499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04800.13	ETC_C1_NDUFA4	79	173	2.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03937	NDUFS4	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0022900	biological_process	electron transport chain
GO:0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	152.445
	SRR3591706	second leaf	77.057
	SRR3591707	mature leaf	53.634
	SRR3591708	Shoot apex	120.432
	SRR3591709	Stem	99.804
	SRR3591710	White floral bud	80.340
	SRR3591711	White flower	101.030
	SRR3591712	Green floral bud	134.088
	SRR3591713	Yellow flower	114.338
SRP173429	SRR8316895	Juvenile bud stage	38.376
	SRR8316896	Juvenile bud stage	54.031
	SRR8316897	Juvenile bud stage	34.742
	SRR8316894	Third green stage	28.900
	SRR8316900	Third green stage	104.130
	SRR8316901	Third green stage	102.094
	SRR8316898	Complete white stage	32.300
	SRR8316899	Complete white stage	81.385
	SRR8316903	Complete white stage	47.817
	SRR8316902	Silver flowering stage	31.067
	SRR8316904	Silver flowering stage	31.576
	SRR8316905	Silver flowering stage	17.201
	SRR8316906	Gold flowering stage	66.264
	SRR8316907	Gold flowering stage	67.879
	SRR8316908	Gold flowering stage	74.735
SRP132670	SRR6706286	Control	81.443
	SRR6706287	Light intensity 50%	81.323
	SRR6706288	Light intensity 20%	99.488
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.994
	CNS0095593	Slightly white alabastrum(diploid) 2	90.535
	CNS0095594	Slightly white alabastrum(diploid) 3	75.624
	CNS0095595	Whole white alabastrum(diploid) 2	91.324
	CNS0095596	Whole white alabastrum(diploid) 3	95.405
	CNS0095597	Whole white alabastrum(diploid) 4	90.839
	CNS0095598	Silvery flower (diploied) 1	51.569
	CNS0095599	Silvery flower (diploied) 2	55.129
	CNS0095600	Silvery flower (diploied) 3	64.542
	CNS0095601	Golden flower (diploid) 1	47.398
	CNS0095602	Golden flower (diploid) 2	58.800
	CNS0095603	Golden flower (diploid) 3	56.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	93.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	93.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	86.796
	CNS0095609	Whole white alabastrum(tetraploid) 3	85.363
	CNS0095610	Silvery flower (tetraploid) 1	64.900
	CNS0095611	Silvery flower (tetraploid) 2	54.953
	CNS0095612	Silvery flower (tetraploid) 3	62.014
	CNS0095613	Golden flower (tetraploid) 1	57.787
	CNS0095614	Golden flower (tetraploid) 2	57.324
	CNS0095615	Golden flower (tetraploid) 3	55.959
CRA001975	CRR073297	Stem 1	46.889
	CRR073298	Stem 2	43.380
	CRR073299	Stem 3	51.971
	CRR073300	Leaf 1	51.169
	CRR073301	Leaf 2	62.364
	CRR073302	Leaf 3	83.732
	CRR073303	Juvenile bud 1	76.038
	CRR073304	Juvenile bud 2	60.643
	CRR073305	Juvenile bud 3	63.809
	CRR073306	Third green 1	33.120
	CRR073307	Third green 2	35.333
	CRR073308	Third green 3	31.641
	CRR073309	Second white 1	55.403
	CRR073310	Second white 2	40.072
	CRR073311	Second white 3	30.100
	CRR073312	Silver flowering 1	35.415
	CRR073313	Silver flowering 2	47.091
	CRR073314	Silver flowering 3	32.163
	CRR073315	Gold flowering 1	37.686
	CRR073316	Gold flowering 2	30.275
	CRR073317	Gold flowering 3	36.223
	CRR073318	Tawny withering 1	56.323
	CRR073319	Tawny withering 2	53.900
	CRR073320	Tawny withering 3	55.567