Gene detail

Detail information of GWHGAAZE023484

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786348.1	1.18173E-94	PREDICTED: telomere repeat-binding factor 1-like [Nicotiana sylvestris]
Swissprot	tr\|C0HIA3\|SMH6_MAIZE	7E-73	Single myb histone 6
trEMBL	tr\|A0A068U243\|A0A068U243_COFCA	6E-94	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02610.1}
TAIR10	AT1G49950.3	5E-53	telomere repeat binding factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9916918	9920650	-
GWHAAZE00000007	mRNA	9916918	9920650	-
GWHAAZE00000007	exon	9916918	9917286	-
GWHAAZE00000007	exon	9918435	9918518	-
GWHAAZE00000007	exon	9918897	9918981	-
GWHAAZE00000007	exon	9920168	9920385	-
GWHAAZE00000007	exon	9920501	9920650	-
GWHAAZE00000007	CDS	9920501	9920650	-
GWHAAZE00000007	CDS	9920168	9920385	-
GWHAAZE00000007	CDS	9918897	9918981	-
GWHAAZE00000007	CDS	9918435	9918518	-
GWHAAZE00000007	CDS	9916918	9917286	-

Transcript Sequence
>GWHTAAZE023514 ATGGGTGCTCCCAAGCAAAAGTGGAGGGAAGAAGAGGAAGCTGCTCTTAAAGCAGGGGTGGCTAAGTATGGTGCAGGCAAGTGGAGCACAATCCTCAAAGACCCTGAGTTTAGCACCATCTTGCGTTTGCGGTCAAATGTGGACCTCAAGGATAAATGGAGAAATCTGAATGTCCTTGCAAGCGGATTTGGGTCTAGGCAGAAGGCTAGAGTTGCATCAAAAAACAATCAACAGATCCCCAAGCCTGATGAAAATTCAATGGCCCTTAGCACAGAACTCGCGAGCGATATCGAAATTGTTGATGCTAAGCCTCTTGCTACATCCATTGGAATGTTGGAAATTGCTGGTTCCAAGAAACCAATCTCAAGGTTGGAGAATCTTATAGTGGAGGCTATAAACAAGTTGAAGGAGCCTCGTGGTTCCAGCAGGGCTACAATTTCCATGTACATAGAGGAGCATTACTCGGCACCTCCAAACTTGGAAAAGCTTTTGCAGCCCAGCTTAAAGCTTTTGACAGAGAATGGAAAGTTGATTAAGGTAAAGCATCAGTACAGGATTGCACCGAGTGCACAATCATTTGATGTGAGGGAAGAGCCACCAACCCCTTTGCTCTTAGAGGGAAAGAAGGATTCTCCCAGAGTACAAACTAAAGTCACTAGGGTTCTTACAAAAGCCCTAATTGATGCAGAGCTGGAGAAGATGAGAAGCATGACTGCAATGGAGGCGGCTGCAGCTGCCGCCCAAGCTGTTGCAGAGGCAGAAGCTGCTATTGCAGCAGCTGAAGCAGCGGCAATGGAAGCTGAAGATGCAGAGCGCGATGCTGAAGTAACGCGCGCTTTTGCTGAAGCGGCGATGAAGGCATTGAAGTGTTCTTCGTCGCACAAGTTTTTGGTGAAGCAGCATTGA

Network for GWHGAAZE023484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	5	56	2.30E-08
PF00538.20	Linker_histone	124	181	3.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	biological_process	nucleosome assembly
GO:0000786	cellular_component	nucleosome
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.540
	SRR3591706	second leaf	4.612
	SRR3591707	mature leaf	6.121
	SRR3591708	Shoot apex	6.341
	SRR3591709	Stem	11.928
	SRR3591710	White floral bud	12.187
	SRR3591711	White flower	10.235
	SRR3591712	Green floral bud	8.574
	SRR3591713	Yellow flower	7.390
SRP173429	SRR8316895	Juvenile bud stage	8.011
	SRR8316896	Juvenile bud stage	11.524
	SRR8316897	Juvenile bud stage	4.500
	SRR8316894	Third green stage	4.134
	SRR8316900	Third green stage	10.646
	SRR8316901	Third green stage	7.852
	SRR8316898	Complete white stage	6.296
	SRR8316899	Complete white stage	13.104
	SRR8316903	Complete white stage	7.561
	SRR8316902	Silver flowering stage	4.625
	SRR8316904	Silver flowering stage	5.737
	SRR8316905	Silver flowering stage	2.558
	SRR8316906	Gold flowering stage	8.865
	SRR8316907	Gold flowering stage	10.343
	SRR8316908	Gold flowering stage	7.198
SRP132670	SRR6706286	Control	9.475
	SRR6706287	Light intensity 50%	8.137
	SRR6706288	Light intensity 20%	11.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.709
	CNS0095593	Slightly white alabastrum(diploid) 2	7.725
	CNS0095594	Slightly white alabastrum(diploid) 3	10.689
	CNS0095595	Whole white alabastrum(diploid) 2	10.334
	CNS0095596	Whole white alabastrum(diploid) 3	9.980
	CNS0095597	Whole white alabastrum(diploid) 4	9.652
	CNS0095598	Silvery flower (diploied) 1	7.257
	CNS0095599	Silvery flower (diploied) 2	5.495
	CNS0095600	Silvery flower (diploied) 3	12.291
	CNS0095601	Golden flower (diploid) 1	6.918
	CNS0095602	Golden flower (diploid) 2	10.666
	CNS0095603	Golden flower (diploid) 3	9.009
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.347
	CNS0095610	Silvery flower (tetraploid) 1	8.965
	CNS0095611	Silvery flower (tetraploid) 2	9.870
	CNS0095612	Silvery flower (tetraploid) 3	8.676
	CNS0095613	Golden flower (tetraploid) 1	4.392
	CNS0095614	Golden flower (tetraploid) 2	6.561
	CNS0095615	Golden flower (tetraploid) 3	3.674
CRA001975	CRR073297	Stem 1	10.609
	CRR073298	Stem 2	11.276
	CRR073299	Stem 3	11.880
	CRR073300	Leaf 1	13.416
	CRR073301	Leaf 2	13.140
	CRR073302	Leaf 3	11.078
	CRR073303	Juvenile bud 1	11.894
	CRR073304	Juvenile bud 2	7.455
	CRR073305	Juvenile bud 3	12.005
	CRR073306	Third green 1	4.782
	CRR073307	Third green 2	5.772
	CRR073308	Third green 3	6.591
	CRR073309	Second white 1	4.650
	CRR073310	Second white 2	5.255
	CRR073311	Second white 3	5.568
	CRR073312	Silver flowering 1	4.153
	CRR073313	Silver flowering 2	2.993
	CRR073314	Silver flowering 3	1.732
	CRR073315	Gold flowering 1	6.398
	CRR073316	Gold flowering 2	9.101
	CRR073317	Gold flowering 3	12.007
	CRR073318	Tawny withering 1	10.402
	CRR073319	Tawny withering 2	10.873
	CRR073320	Tawny withering 3	11.701